RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 PEX11GQ96HA9 241 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 SERINC2Q96SA4 455 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 MAPKAP1Q9BPZ7 522 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 DPH2Q9BQC3 489 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-227ENST00000557269 YIPF2Q9BWQ6 316 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 RBCK1Q9BYM8 510 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 KCMF1Q9P0J7 381 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 IFT80Q9P2H3 777 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-227ENST00000557269 TRPC4Q9UBN4 977 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 DKK4Q9UBT3 224 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 CROTQ9UKG9 612 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 IGLV3-12A0A075B6K2 115 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 NPIPB8E9PQR5 432 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 TAF4O00268 1085 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 HDAC3O15379 428 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 RGS14O43566 566 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 B3GALT2O43825 422 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 EDF1O60869 148 aaKnown RBP12.11□□□□□ -0.47
SHMT2-227ENST00000557269 PEX11AO75192 247 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 KLF7O75840 302 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-227ENST00000557269 TCN2P20062 427 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 PRPH2P23942 346 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 DLSTP36957 453 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 HK2P52789 917 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 ARFIP1P53367 373 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 LIM2P55344 173 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 HNRNPH2P55795 449 aaKnown RBP12.11□□□□□ -0.47
SHMT2-227ENST00000557269 PCBP4P57723 403 aaKnown RBP12.11□□□□□ -0.47
SHMT2-227ENST00000557269 RPS18P62269 152 aaKnown RBP12.11□□□□□ -0.47
SHMT2-227ENST00000557269 NR6A1Q15406 480 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 NKG7Q16617 165 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 GALNTL6Q49A17 601 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 MRM1Q6IN84 353 aaKnown RBP12.11□□□□□ -0.47
SHMT2-227ENST00000557269 UNQ6494/PRO21346Q6UXR6 183 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 LAPTM4BQ86VI4 370 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 NUDT13Q86X67 352 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 PRSS58Q8IYP2 241 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 ZCCHC7Q8N3Z6 543 aaKnown RBP12.11□□□□□ -0.47
SHMT2-227ENST00000557269 ENDOVQ8N8Q3 282 aaKnown RBP12.11□□□□□ -0.47
SHMT2-227ENST00000557269 TMEM52Q8NDY8 209 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 SNIP1Q8TAD8 396 aaKnown RBP12.11□□□□□ -0.47
SHMT2-227ENST00000557269 CSF3RQ99062 836 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 CENPKQ9BS16 269 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 EBPLQ9BY08 206 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 WDR55Q9H6Y2 383 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-227ENST00000557269 COPS7BQ9H9Q2 264 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-227ENST00000557269 MEAF6Q9HAF1 191 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 LRTM1Q9HBL6 345 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 NMRK1Q9NWW6 199 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 AHSPQ9NZD4 102 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 IL17BQ9UHF5 180 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 FBXW2Q9UKT8 454 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 MAP4K5Q9Y4K4 846 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 ASB4Q9Y574 426 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 MRPS18BQ9Y676 258 aaKnown RBP12.11□□□□□ -0.47
SHMT2-227ENST00000557269 USH1CQ9Y6N9 552 aa12.11□□□□□ -0.47
SHMT2-227ENST00000557269 A0A1W2PR48 441 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 VSTM2BA6NLU5 285 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 WASHC1A8K0Z3 465 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 CYR61O00622 381 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 SDHDO14521 159 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 SEC22BO75396 215 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 PRKRAO75569 313 aaKnown RBP12.1□□□□□ -0.47
SHMT2-227ENST00000557269 FAM58BPP0C7Q3 252 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 LIFP15018 202 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 WT1P19544 449 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-227ENST00000557269 TSFMP43897 325 aaKnown RBP12.1□□□□□ -0.47
SHMT2-227ENST00000557269 XCR1P46094 333 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 HNRNPFP52597 415 aaKnown RBP12.1□□□□□ -0.47
SHMT2-227ENST00000557269 ACSM2AQ08AH3 577 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 DNASE1L3Q13609 305 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 NCF4Q15080 339 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 SLC9B1Q4ZJI4 515 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 C6orf136Q5SQH8 315 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 CCNYL2Q5T2Q4 361 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 ACSM2BQ68CK6 577 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 C18orf63Q68DL7 685 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 CGB2Q6NT52 195 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 LRRC34Q8IZ02 419 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 MMP21Q8N119 569 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 IL22RA1Q8N6P7 574 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 FAM47BQ8NA70 645 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 STT3BQ8TCJ2 826 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 FKBP10Q96AY3 582 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 TUBGCP3Q96CW5 907 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 ZNF317Q96PQ6 595 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-227ENST00000557269 SPSB2Q99619 263 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 MESP1Q9BRJ9 268 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 NPLQ9BXD5 320 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-227ENST00000557269 ROGDIQ9GZN7 287 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 SLC26A1Q9H2B4 701 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 SOX17Q9H6I2 414 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-227ENST00000557269 AKTIPQ9H8T0 292 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 LANCL2Q9NS86 450 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 FGFR1OP2Q9NVK5 253 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 WDR70Q9NW82 654 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 C1orf109Q9NX04 203 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 SIRT5Q9NXA8 310 aa12.1□□□□□ -0.47
SHMT2-227ENST00000557269 TEX10Q9NXF1 929 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-227ENST00000557269 ZNF282Q9UDV7 671 aaPredicted RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms