RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 CT55Q8WUE5 264 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 COL26A1Q96A83 441 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 SLC7A6OSQ96CW6 309 aaPredicted RBP10.35□□□□□ -0.75
SHMT2-218ENST00000555213 MTFMTQ96DP5 389 aaKnown RBP10.35□□□□□ -0.75
SHMT2-218ENST00000555213 MMABQ96EY8 250 aaPredicted RBP10.35□□□□□ -0.75
SHMT2-218ENST00000555213 CMTM7Q96FZ5 175 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 FRG2BQ96QU4 278 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 CCNL2Q96S94 520 aaPredicted RBP10.35□□□□□ -0.75
SHMT2-218ENST00000555213 GPR87Q9BY21 358 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 SLC6A16Q9GZN6 736 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 ROGDIQ9GZN7 287 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 REXO4Q9GZR2 422 aaKnown RBP10.35□□□□□ -0.75
SHMT2-218ENST00000555213 CHST8Q9H2A9 424 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 SYNPO2LQ9H987 977 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 COPS7BQ9H9Q2 264 aaPredicted RBP10.35□□□□□ -0.75
SHMT2-218ENST00000555213 ZNF304Q9HCX3 659 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 CROTQ9UKG9 612 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 NXT1Q9UKK6 140 aaKnown RBP10.35□□□□□ -0.75
SHMT2-218ENST00000555213 BAHCC1Q9P281 2608 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 CHD6Q8TD26 2715 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 ACACAQ13085 2346 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 A0A0A6YYC8 382 aaPredicted RBP10.34□□□□□ -0.75
SHMT2-218ENST00000555213 NPIPB8E9PQR5 432 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 H0YIG0 161 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 I3L1I5 382 aaPredicted RBP10.34□□□□□ -0.75
SHMT2-218ENST00000555213 ERI3O43414 337 aaKnown RBP10.34□□□□□ -0.75
SHMT2-218ENST00000555213 ABCB7O75027 752 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 ULK1O75385 1050 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 KLHL18O94889 574 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 NSA2O95478 260 aaKnown RBP10.34□□□□□ -0.75
SHMT2-218ENST00000555213 CBX6O95503 412 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 TBX6O95947 436 aaPredicted RBP10.34□□□□□ -0.75
SHMT2-218ENST00000555213 CHEK2O96017 543 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 CAPNS1P04632 268 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 RAB40ALP0C0E4 278 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 ZNF888P0CJ79 500 aaPredicted RBP10.34□□□□□ -0.75
SHMT2-218ENST00000555213 IL1RNP18510 177 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 NCF2P19878 526 aaPredicted RBP10.34□□□□□ -0.75
SHMT2-218ENST00000555213 TCN2P20062 427 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 ZFP36L2P47974 494 aaKnown RBP10.34□□□□□ -0.75
SHMT2-218ENST00000555213 MC1RQ01726 317 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 OCA2Q04671 838 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 SLC9A5Q14940 896 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 NCF4Q15080 339 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 TGIF1Q15583 401 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 DEFB134Q4QY38 66 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 RFTN2Q52LD8 501 aaPredicted RBP10.34□□□□□ -0.75
SHMT2-218ENST00000555213 C6orf136Q5SQH8 315 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 ZNF385CQ66K41 422 aaPredicted RBP10.34□□□□□ -0.75
SHMT2-218ENST00000555213 ADNP2Q6IQ32 1131 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 OGFOD2Q6N063 350 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 FAM198BQ6UWH4 519 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 ZNF517Q6ZMY9 492 aaPredicted RBP10.34□□□□□ -0.75
SHMT2-218ENST00000555213 ACAD11Q709F0 780 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 VASH2Q86V25 355 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 OR2L5Q8NG80 312 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 HUS1BQ8NHY5 278 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 NSL1Q96IY1 281 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 CATSPER2Q96P56 530 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 KCNC2Q96PR1 638 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 HBEGFQ99075 208 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 MTERF1Q99551 399 aaKnown RBP10.34□□□□□ -0.75
SHMT2-218ENST00000555213 CCT7Q99832 543 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 MACROD1Q9BQ69 325 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 WDR54Q9H977 334 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 SLC52A3Q9NQ40 469 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 DMRT3Q9NQL9 472 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 C14orf105Q9NVL8 296 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 NMRK1Q9NWW6 199 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 TRPC4Q9UBN4 977 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 ZNF282Q9UDV7 671 aaPredicted RBP10.34□□□□□ -0.75
SHMT2-218ENST00000555213 RALYQ9UKM9 306 aaKnown RBP10.34□□□□□ -0.75
SHMT2-218ENST00000555213 G3BP2Q9UN86 482 aaKnown RBP10.34□□□□□ -0.75
SHMT2-218ENST00000555213 SLC12A4Q9UP95 1085 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 NAALAD2Q9Y3Q0 740 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 COPG1Q9Y678 874 aaKnown RBP10.34□□□□□ -0.75
SHMT2-218ENST00000555213 MAU2Q9Y6X3 613 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 HEATR5BQ9P2D3 2071 aa10.34□□□□□ -0.75
SHMT2-218ENST00000555213 SDK2Q58EX2 2172 aa10.33□□□□□ -0.76
SHMT2-218ENST00000555213 A0A087WV48 116 aa10.33□□□□□ -0.76
SHMT2-218ENST00000555213 LRIT2A6NDA9 550 aa10.33□□□□□ -0.76
SHMT2-218ENST00000555213 ANKRD65E5RJM6 399 aa10.33□□□□□ -0.76
SHMT2-218ENST00000555213 FOXE1O00358 373 aaPredicted RBP10.33□□□□□ -0.76
SHMT2-218ENST00000555213 LSM1O15116 133 aaKnown RBP10.33□□□□□ -0.76
SHMT2-218ENST00000555213 B3GALT2O43825 422 aa10.33□□□□□ -0.76
SHMT2-218ENST00000555213 GALR3O60755 368 aaPredicted RBP10.33□□□□□ -0.76
SHMT2-218ENST00000555213 PEX11AO75192 247 aa10.33□□□□□ -0.76
SHMT2-218ENST00000555213 ALBP02768 609 aa10.33□□□□□ -0.76
SHMT2-218ENST00000555213 LIFP15018 202 aa10.33□□□□□ -0.76
SHMT2-218ENST00000555213 LBPP18428 481 aa10.33□□□□□ -0.76
SHMT2-218ENST00000555213 ITGAXP20702 1163 aa10.33□□□□□ -0.76
SHMT2-218ENST00000555213 GPX3P22352 226 aa10.33□□□□□ -0.76
SHMT2-218ENST00000555213 PRPH2P23942 346 aa10.33□□□□□ -0.76
SHMT2-218ENST00000555213 PTX3P26022 381 aaPredicted RBP10.33□□□□□ -0.76
SHMT2-218ENST00000555213 PTPN4P29074 926 aa10.33□□□□□ -0.76
SHMT2-218ENST00000555213 FOLR3P41439 243 aa10.33□□□□□ -0.76
SHMT2-218ENST00000555213 OR1D4P47884 311 aa10.33□□□□□ -0.76
SHMT2-218ENST00000555213 MRPL19P49406 292 aaKnown RBP10.33□□□□□ -0.76
SHMT2-218ENST00000555213 DIO3P55073 304 aa10.33□□□□□ -0.76
SHMT2-218ENST00000555213 TMPRSS3P57727 454 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms