RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 H3BMQ9 156 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 M0R3G1 203 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 M0R3H8 397 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 STK25O00506 426 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 NDUFS4O43181 175 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 GMFGO60234 142 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 OR10H3O60404 316 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 SCN2BO60939 215 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 CCNDBP1O95273 360 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 KLF8O95600 359 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-215ENST00000552823 NR2F1P10589 423 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 PTPN6P29350 595 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 CLK3P49761 638 aaKnown RBP5.34□□□□□ -1.55
LIMA1-215ENST00000552823 NUBP1P53384 320 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 NCS1P62166 190 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 ZNF763Q0D2J5 394 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 DYNC1I2Q13409 638 aaKnown RBP5.34□□□□□ -1.55
LIMA1-215ENST00000552823 CLCA4Q14CN2 919 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 SYPL1Q16563 259 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 MPEG1Q2M385 716 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 ZBED5Q49AG3 693 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 ATAT1Q5SQI0 421 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 CPZQ66K79 652 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 GRHL2Q6ISB3 625 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 ZC3H14Q6PJT7 736 aaKnown RBP5.34□□□□□ -1.55
LIMA1-215ENST00000552823 ZCCHC7Q8N3Z6 543 aaKnown RBP5.34□□□□□ -1.55
LIMA1-215ENST00000552823 IQCF1Q8N6M8 205 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 ANKRD53Q8N9V6 530 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 UBTD2Q8WUN7 234 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 CLIP3Q96DZ5 547 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 C16orf58Q96GQ5 468 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 COQ10AQ96MF6 247 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 COG8Q96MW5 612 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 NIPSNAP1Q9BPW8 284 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 WFDC6Q9BQY6 131 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 DPH7Q9BTV6 452 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 SLAMF7Q9NQ25 335 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 POLE4Q9NR33 117 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 ZCCHC3Q9NUD5 404 aaKnown RBP5.34□□□□□ -1.55
LIMA1-215ENST00000552823 PTTG2Q9NZH5 202 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 ST14Q9Y5Y6 855 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 EP300Q09472 2414 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-215ENST00000552823 SLC1A7O00341 560 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 PLPP1O14494 284 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 PGRMC2O15173 223 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 TMPRSS11DO60235 418 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 CYP7B1O75881 506 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 EML2O95834 649 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 CH25HO95992 272 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 DNTTP04053 509 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 CKMT1AP12532 417 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 POLR2CP19387 275 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-215ENST00000552823 ITGB7P26010 798 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 DRD3P35462 400 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 CTSKP43235 329 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 CLK1P49759 484 aaKnown RBP5.34□□□□□ -1.55
LIMA1-215ENST00000552823 TAS2R38P59533 333 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 PPP2CBP62714 309 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 PPP2CAP67775 309 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 HYAL2Q12891 473 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 CDK5R2Q13319 367 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 PIN1Q13526 163 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-215ENST00000552823 ADRM1Q16186 407 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 DEFB110Q30KQ9 67 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 GPAT3Q53EU6 434 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 C18orf63Q68DL7 685 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 DSG4Q86SJ6 1040 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 GALNT13Q8IUC8 556 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.34□□□□□ -1.55
LIMA1-215ENST00000552823 SPARTQ8N0X7 666 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 KRT78Q8N1N4 520 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 METTL27Q8N6F8 245 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-215ENST00000552823 HORMAD2Q8N7B1 307 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 SIMC1Q8NDZ2 872 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 OR10G2Q8NGC3 310 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 OR56A3Q8NH54 315 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 PHF10Q8WUB8 498 aaKnown RBP5.34□□□□□ -1.55
LIMA1-215ENST00000552823 NACC2Q96BF6 587 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 TAMM41Q96BW9 452 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 NRBF2Q96F24 287 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 VPS35Q96QK1 796 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 AIF1LQ9BQI0 150 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 FAM83CQ9BQN1 747 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 RBM38Q9H0Z9 239 aaKnown RBP5.34□□□□□ -1.55
LIMA1-215ENST00000552823 TPK1Q9H3S4 243 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 GORASP2Q9H8Y8 452 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 GPATCH2Q9NW75 528 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 PAK1IP1Q9NWT1 392 aaPredicted RBP5.34□□□□□ -1.55
LIMA1-215ENST00000552823 SAGE1Q9NXZ1 904 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 SCN3BQ9NY72 215 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 RPS6KA6Q9UK32 745 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 CNOT11Q9UKZ1 510 aaKnown RBP5.34□□□□□ -1.55
LIMA1-215ENST00000552823 CLCA2Q9UQC9 943 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 PPIL1Q9Y3C6 166 aa5.34□□□□□ -1.55
LIMA1-215ENST00000552823 PTPRZ1P23471 2315 aaPredicted RBP5.34□□□□□ -1.56
LIMA1-215ENST00000552823 PLXNA4Q9HCM2 1894 aa5.34□□□□□ -1.56
LIMA1-215ENST00000552823 TRANK1O15050 2925 aa5.34□□□□□ -1.56
LIMA1-215ENST00000552823 TTC28Q96AY4 2481 aa5.33□□□□□ -1.56
LIMA1-215ENST00000552823 CNOT1A5YKK6 2376 aaKnown RBP5.33□□□□□ -1.56
LIMA1-215ENST00000552823 NPIPA5A0A0B4J1W7 369 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms