RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 HMG20BQ9P0W2 317 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 CACNG5Q9UF02 275 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 ODF2LQ9ULJ1 636 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 EXOC7Q9UPT5 735 aa3.56□□□□□ -1.84
VPS29-205ENST00000548539 STRAPQ9Y3F4 350 aaKnown RBP3.56□□□□□ -1.84
VPS29-205ENST00000548539 MEIOCA2RUB1 952 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 GTPBP10A4D1E9 387 aaKnown RBP3.55□□□□□ -1.84
VPS29-205ENST00000548539 CCDC69A6NI79 296 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 C15orf61A6NNL5 157 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 SURF4O15260 269 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 SIGLEC5O15389 551 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 HSF2BPO75031 334 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 CXCL14O95715 111 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 IGHEP01854 428 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 SLC4A1P02730 911 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 AREGP15514 252 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 TYMPP19971 482 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 ACKR3P25106 362 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 OR1D2P34982 312 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 KCNK10P57789 538 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 WASHC5Q12768 1159 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 TMEM187Q14656 261 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 SPHARQ15513 63 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 SPANXN4Q5MJ08 99 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 CEP85LQ5SZL2 805 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 PRAMEF7Q5VXH5 474 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 CES4AQ5XG92 561 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 CNSTQ6PJW8 725 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 FIP1L1Q6UN15 594 aaKnown RBP3.55□□□□□ -1.84
VPS29-205ENST00000548539 B3GLCTQ6Y288 498 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 Q6ZRP5 223 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 RFPL4BQ6ZWI9 263 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 NOTCH2NLQ7Z3S9 236 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 ZSCAN30Q86W11 494 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 CATSPERDQ86XM0 798 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 ZNF444Q8N0Y2 327 aaPredicted RBP3.55□□□□□ -1.84
VPS29-205ENST00000548539 ZNF619Q8N2I2 560 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 FBXW8Q8N3Y1 598 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 OR52E1Q8NGJ3 308 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 ATP8B4Q8TF62 1192 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 UBTD2Q8WUN7 234 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 CXorf58Q96LI9 332 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 GUCD1Q96NT3 240 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 RUFY1Q96T51 708 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 LITAFQ99732 161 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 FAM213AQ9BRX8 229 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 WWTR1Q9GZV5 400 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 TSPYL1Q9H0U9 437 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 ZDHHC6Q9H6R6 413 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 DCLRE1BQ9H816 532 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 IL19Q9UHD0 177 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 TRMT6Q9UJA5 497 aaKnown RBP3.55□□□□□ -1.84
VPS29-205ENST00000548539 GAB2Q9UQC2 676 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 OR1A2Q9Y585 309 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 ARID2Q68CP9 1835 aa3.55□□□□□ -1.84
VPS29-205ENST00000548539 WDR81Q562E7 1941 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 KIAA1217Q5T5P2 1943 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 DHX29Q7Z478 1369 aaKnown RBP3.54□□□□□ -1.84
VPS29-205ENST00000548539 A0A087X002 238 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 hCG_38984A0A1B0GV85 526 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 KRT87PA6NCN2 255 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 SRRM4A7MD48 611 aaKnown RBP3.54□□□□□ -1.84
VPS29-205ENST00000548539 ANHXE9PGG2 379 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 LMO7DNF2Z398 122 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 SLC28A1O00337 649 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 NXPH2O95156 264 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 DUS4LO95620 317 aaKnown RBP3.54□□□□□ -1.84
VPS29-205ENST00000548539 RPLP0P05388 317 aaKnown RBP3.54□□□□□ -1.84
VPS29-205ENST00000548539 GAP43P17677 238 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 C4BPBP20851 252 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 GIFP27352 417 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 FEN1P39748 380 aaKnown RBP3.54□□□□□ -1.84
VPS29-205ENST00000548539 PITPNBP48739 271 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 EVCP57679 992 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 KRTAP10-3P60369 221 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 SRP54P61011 504 aaKnown RBP3.54□□□□□ -1.84
VPS29-205ENST00000548539 PPP1R8Q12972 351 aaKnown RBP3.54□□□□□ -1.84
VPS29-205ENST00000548539 PDK1Q15118 436 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 FAM189A2Q15884 450 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 HLA-BQ31612 363 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 ZFP69Q49AA0 526 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 Q6ZVQ6 151 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 DND1Q8IYX4 353 aaKnown RBP3.54□□□□□ -1.84
VPS29-205ENST00000548539 CCDC197Q8NCU1 140 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 CCNYQ8ND76 341 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 OR5T2Q8NGG2 359 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 OR4D10Q8NGI6 311 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 OR2T6Q8NHC8 308 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 EXOC6Q8TAG9 804 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 PRCCQ92733 491 aaPredicted RBP3.54□□□□□ -1.84
VPS29-205ENST00000548539 EEF2KMTQ96G04 330 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 RUNDC3BQ96NL0 473 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 ERGIC2Q96RQ1 377 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 NAP1L3Q99457 506 aaPredicted RBP3.54□□□□□ -1.84
VPS29-205ENST00000548539 SPXQ9BT56 116 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 TEX13AQ9BXU3 409 aaPredicted RBP3.54□□□□□ -1.84
VPS29-205ENST00000548539 XPO4Q9C0E2 1151 aaKnown RBP3.54□□□□□ -1.84
VPS29-205ENST00000548539 CARD9Q9H257 536 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 SYTL2Q9HCH5 934 aa3.54□□□□□ -1.84
VPS29-205ENST00000548539 FGF22Q9HCT0 170 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms