RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 RNF148Q8N7C7 305 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 TXNDC5Q8NBS9 432 aaKnown RBP7.54□□□□□ -1.2
VPS13D-211ENST00000543710 SLC5A11Q8WWX8 675 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 AUTS2Q8WXX7 1259 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 PGAP3Q96FM1 320 aaPredicted RBP7.54□□□□□ -1.2
VPS13D-211ENST00000543710 PCED1BQ96HM7 432 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 HHIPQ96QV1 700 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 CPNE5Q9HCH3 593 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 CHMP1AQ9HD42 196 aaPredicted RBP7.54□□□□□ -1.2
VPS13D-211ENST00000543710 POLE4Q9NR33 117 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 EGFL7Q9UHF1 273 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 MAP4K5Q9Y4K4 846 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 TMEM14AQ9Y6G1 99 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 BORCS7-ASMTA0A0B4J1R7 106 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 DPM1O60762 260 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 EDNRAP25101 427 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 PTBP1P26599 531 aaKnown RBP eCLIP7.54□□□□□ -1.21e-7■■■■■ 29.3
VPS13D-211ENST00000543710 BMP8BP34820 402 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 SHMT2P34897 504 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 CLCN7P51798 805 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 STC1P52823 247 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 TUBB3Q13509 450 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 LEXMQ3ZCV2 418 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 RNF220Q5VTB9 566 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 SERINC5Q86VE9 423 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 TOR1AIP2Q8NFQ8 470 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 RADILQ96JH8 1075 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 ARL5BQ96KC2 179 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 HSD3B7Q9H2F3 369 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 REEP4Q9H6H4 257 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 RPF2Q9H7B2 306 aaKnown RBP7.54□□□□□ -1.2
VPS13D-211ENST00000543710 SMURF1Q9HCE7 757 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 SLC39A1Q9NY26 324 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 ZNF224Q9NZL3 707 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 APOBEC3BQ9UH17 382 aaKnown RBP7.54□□□□□ -1.2
VPS13D-211ENST00000543710 MYH3P11055 1940 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 UNC119BA6NIH7 251 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 UPK3BL1B0FP48 263 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 UPK3BL2E5RIL1 263 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 CREG1O75629 220 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 HTR1AP08908 422 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 CYP4B1P13584 511 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 ICAM2P13598 275 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 ENGP17813 658 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 RHCEP18577 417 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 S100A7P31151 101 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 CSNK1DP48730 415 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 PRKAG1P54619 331 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 RPA4Q13156 261 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 CTC1Q2NKJ3 1217 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 MORN1Q5T089 497 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 ARHGAP11AQ6P4F7 1023 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 C15orf39Q6ZRI6 1047 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 CILP2Q8IUL8 1156 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 DCUN1D3Q8IWE4 304 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 OR52E4Q8NGH9 312 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 BCL2L14Q9BZR8 327 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 DCSTAMPQ9H295 470 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 SUV39H2Q9H5I1 410 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 AKTIPQ9H8T0 292 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 SLCO1B3Q9NPD5 702 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 C11orf16Q9NQ32 467 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 EIF2B4Q9UI10 523 aaKnown RBP7.53□□□□□ -1.2
VPS13D-211ENST00000543710 NRAPQ86VF7 1730 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 HEXBP07686 556 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 GALK1P51570 392 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 ZNF234Q14588 700 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 PIGGQ5H8A4 983 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 MPP7Q5T2T1 576 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 PRAMEF17Q5VTA0 474 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 DCAF12L1Q5VU92 463 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 MAMDC4Q6UXC1 1216 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 CLEC20AQ6ZU45 233 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 BMP8AQ7Z5Y6 402 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 AMZ2Q86W34 360 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 OR10A6Q8NH74 314 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 HSPA12BQ96MM6 686 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 HDHD5Q9BXW7 423 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 FN3KQ9H479 309 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 APOBEC3GQ9HC16 384 aaKnown RBP7.53□□□□□ -1.2
VPS13D-211ENST00000543710 KCNIP3Q9Y2W7 256 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 A0A1B0GVI7 797 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 TISP43B9A030 160 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 CCRL2O00421 344 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 POLR1CO15160 346 aaPredicted RBP7.53□□□□□ -1.2
VPS13D-211ENST00000543710 MID1O15344 667 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 OR1F1O43749 312 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 TYROBPO43914 113 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 OAZ2O95190 189 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 F2P00734 622 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 HAPLN1P10915 354 aaPredicted RBP7.53□□□□□ -1.2
VPS13D-211ENST00000543710 RNH1P13489 461 aaKnown RBP7.53□□□□□ -1.2
VPS13D-211ENST00000543710 PCMT1P22061 227 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 GRK5P34947 590 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 AFF3P51826 1226 aaKnown RBP7.53□□□□□ -1.2
VPS13D-211ENST00000543710 DIO3P55073 304 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 TARDBPQ13148 414 aaKnown RBP eCLIP7.53□□□□□ -1.23e-8■■■□□ 14.8
VPS13D-211ENST00000543710 SF1Q15637 639 aaKnown RBP7.53□□□□□ -1.2
VPS13D-211ENST00000543710 DECR1Q16698 335 aa7.53□□□□□ -1.2
VPS13D-211ENST00000543710 PTCHD3Q3KNS1 767 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms