RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 CYB5D1Q6P9G0 228 aa19.97■□□□□ 0.79
VPS28-208ENST00000527797 WDR74Q6RFH5 385 aaPredicted RBP19.97■□□□□ 0.79
VPS28-208ENST00000527797 TICAM1Q8IUC6 712 aa19.97■□□□□ 0.79
VPS28-208ENST00000527797 SLC15A3Q8IY34 581 aa19.97■□□□□ 0.79
VPS28-208ENST00000527797 KIAA2013Q8IYS2 634 aa19.97■□□□□ 0.79
VPS28-208ENST00000527797 RNF148Q8N7C7 305 aa19.97■□□□□ 0.79
VPS28-208ENST00000527797 ZCCHC10Q8TBK6 192 aa19.97■□□□□ 0.79
VPS28-208ENST00000527797 NAT6Q93015 286 aa19.97■□□□□ 0.79
VPS28-208ENST00000527797 CCDC124Q96CT7 223 aaKnown RBP19.97■□□□□ 0.79
VPS28-208ENST00000527797 SMIM10Q96HG1 83 aa19.97■□□□□ 0.79
VPS28-208ENST00000527797 NANOGQ9H9S0 305 aa19.97■□□□□ 0.79
VPS28-208ENST00000527797 ABCD2Q9UBJ2 740 aa19.97■□□□□ 0.79
VPS28-208ENST00000527797 BTNL2Q9UIR0 455 aa19.97■□□□□ 0.79
VPS28-208ENST00000527797 PCDHA9Q9Y5H5 950 aa19.97■□□□□ 0.79
VPS28-208ENST00000527797 RFXANKO14593 260 aa19.96■□□□□ 0.79
VPS28-208ENST00000527797 TBX19O60806 448 aa19.96■□□□□ 0.79
VPS28-208ENST00000527797 SNRNP200O75643 2136 aaKnown RBP19.96■□□□□ 0.79
VPS28-208ENST00000527797 B3GALT4O96024 378 aa19.96■□□□□ 0.79
VPS28-208ENST00000527797 DRD2P14416 443 aa19.96■□□□□ 0.79
VPS28-208ENST00000527797 CERS1P27544 350 aa19.96■□□□□ 0.79
VPS28-208ENST00000527797 TRPC1P48995 793 aa19.96■□□□□ 0.79
VPS28-208ENST00000527797 HNRNPFP52597 415 aaKnown RBP19.96■□□□□ 0.79
VPS28-208ENST00000527797 CFHR1Q03591 330 aa19.96■□□□□ 0.79
VPS28-208ENST00000527797 ZNF385BQ569K4 471 aa19.96■□□□□ 0.79
VPS28-208ENST00000527797 LRIF1Q5T3J3 769 aa19.96■□□□□ 0.79
VPS28-208ENST00000527797 DGLUCYQ7Z3D6 616 aa19.96■□□□□ 0.79
VPS28-208ENST00000527797 TMEM125Q96AQ2 219 aa19.96■□□□□ 0.79
VPS28-208ENST00000527797 PANX1Q96RD7 426 aa19.96■□□□□ 0.79
VPS28-208ENST00000527797 PAIP1Q9H074 479 aaKnown RBP19.96■□□□□ 0.79
VPS28-208ENST00000527797 LYARQ9NX58 379 aaKnown RBP19.96■□□□□ 0.79
VPS28-208ENST00000527797 CMTM6Q9NX76 183 aa19.96■□□□□ 0.79
VPS28-208ENST00000527797 NIPSNAP3AQ9UFN0 247 aaPredicted RBP19.96■□□□□ 0.79
VPS28-208ENST00000527797 PLCL2Q9UPR0 1127 aa19.96■□□□□ 0.79
VPS28-208ENST00000527797 ASB4Q9Y574 426 aa19.96■□□□□ 0.79
VPS28-208ENST00000527797 MN1Q10571 1320 aaPredicted RBP19.95■□□□□ 0.78
VPS28-208ENST00000527797 KMT2EQ8IZD2 1858 aa19.95■□□□□ 0.78
VPS28-208ENST00000527797 RNASET2O00584 256 aaKnown RBP19.95■□□□□ 0.78
VPS28-208ENST00000527797 HCRTR1O43613 425 aa19.95■□□□□ 0.78
VPS28-208ENST00000527797 SORBS2O94875 1100 aaKnown RBP19.95■□□□□ 0.78
VPS28-208ENST00000527797 ANP32DO95626 131 aa19.95■□□□□ 0.78
VPS28-208ENST00000527797 ALOX12P18054 663 aa19.95■□□□□ 0.78
VPS28-208ENST00000527797 ALDH9A1P49189 494 aa19.95■□□□□ 0.78
VPS28-208ENST00000527797 KPNB1Q14974 876 aaKnown RBP19.95■□□□□ 0.78
VPS28-208ENST00000527797 PLA2G2CQ5R387 149 aa19.95■□□□□ 0.78
VPS28-208ENST00000527797 LAIR1Q6GTX8 287 aa19.95■□□□□ 0.78
VPS28-208ENST00000527797 TCEAL6Q6IPX3 200 aa19.95■□□□□ 0.78
VPS28-208ENST00000527797 TMEM214Q6NUQ4 689 aaKnown RBP19.95■□□□□ 0.78
VPS28-208ENST00000527797 MMP21Q8N119 569 aa19.95■□□□□ 0.78
VPS28-208ENST00000527797 OR8J3Q8NGG0 315 aa19.95■□□□□ 0.78
VPS28-208ENST00000527797 WDR60Q8WVS4 1066 aa19.95■□□□□ 0.78
VPS28-208ENST00000527797 TCEAL3Q969E4 200 aa19.95■□□□□ 0.78
VPS28-208ENST00000527797 MIEF2Q96C03 454 aa19.95■□□□□ 0.78
VPS28-208ENST00000527797 CCDC115Q96NT0 180 aa19.95■□□□□ 0.78
VPS28-208ENST00000527797 ANKRD27Q96NW4 1050 aa19.95■□□□□ 0.78
VPS28-208ENST00000527797 GBP5Q96PP8 586 aa19.95■□□□□ 0.78
VPS28-208ENST00000527797 SERINC2Q96SA4 455 aa19.95■□□□□ 0.78
VPS28-208ENST00000527797 INPP5KQ9BT40 448 aa19.95■□□□□ 0.78
VPS28-208ENST00000527797 TEX10Q9NXF1 929 aaPredicted RBP19.95■□□□□ 0.78
VPS28-208ENST00000527797 VAPAQ9P0L0 249 aa19.95■□□□□ 0.78
VPS28-208ENST00000527797 CD300AQ9UGN4 299 aa19.95■□□□□ 0.78
VPS28-208ENST00000527797 POMPQ9Y244 141 aa19.95■□□□□ 0.78
VPS28-208ENST00000527797 PCDH15Q96QU1 1955 aa19.95■□□□□ 0.78
VPS28-208ENST00000527797 NME4O00746 187 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 MGRN1O60291 552 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 CPSF4O95639 269 aaKnown RBP19.94■□□□□ 0.78
VPS28-208ENST00000527797 ZNF883P0CG24 379 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 CSF2RBP32927 897 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 ARL4DP49703 201 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 DUSP3P51452 185 aaPredicted RBP19.94■□□□□ 0.78
VPS28-208ENST00000527797 SQSTM1Q13501 440 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 SPATS1Q496A3 300 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 DEFB134Q4QY38 66 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 RABL3Q5HYI8 236 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 PERM1Q5SV97 790 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 DNAJC14Q6Y2X3 702 aaPredicted RBP19.94■□□□□ 0.78
VPS28-208ENST00000527797 NATD1Q8N6N6 113 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 SH3GL1Q99961 368 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 STARD5Q9NSY2 213 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 FBXW2Q9UKT8 454 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 PCDHB14Q9Y5E9 798 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 SLC22A7Q9Y694 548 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 PRORSD1PA6NEY8 169 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 B3GALT2O43825 422 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 TCN1P20061 433 aaPredicted RBP19.94■□□□□ 0.78
VPS28-208ENST00000527797 PI4KAP42356 2102 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 GABRA4P48169 554 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 HSD11B2P80365 405 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 DAB2P98082 770 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 RUNDC3AQ59EK9 446 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 SNAP47Q5SQN1 464 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 NDUFAF5Q5TEU4 345 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 PRSS42Q7Z5A4 293 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 CLECL1Q8IZS7 167 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 FAM47BQ8NA70 645 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 N4BP2L2Q92802 583 aaPredicted RBP19.94■□□□□ 0.78
VPS28-208ENST00000527797 ZNF764Q96H86 408 aaPredicted RBP19.94■□□□□ 0.78
VPS28-208ENST00000527797 TRIM8Q9BZR9 551 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 SLC25A37Q9NYZ2 338 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 TMEM9Q9P0T7 183 aa19.94■□□□□ 0.78
VPS28-208ENST00000527797 PCDHGB4Q9UN71 923 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms