RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 C16orf62Q7Z3J2 963 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 RAB44Q7Z6P3 723 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 TMEM135Q86UB9 458 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 TMPRSS12Q86WS5 348 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 CHERPQ8IWX8 916 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 CADM3Q8N126 398 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 SNIP1Q8TAD8 396 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 TEX47Q8TBZ9 253 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 CERS2Q96G23 380 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 TMEM246Q9BRR3 403 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 MFRPQ9BY79 579 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 TRIT1Q9H3H1 467 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 NARFLQ9H6Q4 476 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 GPAMQ9HCL2 828 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 CUEDC1Q9NWM3 386 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 ADPRHL2Q9NX46 363 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 ASH2LQ9UBL3 628 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 GNPTGQ9UJJ9 305 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 CFAP46Q8IYW2 2715 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 A0A1W2PRG6 482 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 SNX3O60493 162 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 VPS26AO75436 327 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 C7P10643 843 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 DSG2Q14126 1118 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 GRM7Q14831 915 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 GSTA3Q16772 222 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 AARS2Q5JTZ9 985 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 NIPAL1Q6NVV3 410 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 MAMDC2Q7Z304 686 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 SHISA5Q8N114 240 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 HM13Q8TCT9 377 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 FATE1Q969F0 183 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 ITPKCQ96DU7 683 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 LYSMD1Q96S90 227 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 MESP1Q9BRJ9 268 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 PRRG3Q9BZD7 231 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 MYLK2Q9H1R3 596 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 Q9H521 79 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 POLE4Q9NR33 117 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 ZFP69BQ9UJL9 534 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 ESPL1Q14674 2120 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 NPEPPSL1A6NEC2 478 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 TRPC5OSA6NMA1 111 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 ZNF487B1APH4 448 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 GNB5O14775 395 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 SLC16A8O95907 504 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 HIST1H2AGP0C0S8 130 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 NR2C1P13056 603 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 HIST1H2ADP20671 130 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 ARNTP27540 789 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 GPC1P35052 558 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 DCAF12Q5T6F0 453 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 AMIGO2Q86SJ2 522 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 SNX29P2Q8IUI4 249 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 SPACA3Q8IXA5 215 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 ASCC1Q8N9N2 400 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 ZDHHC19Q8WVZ1 309 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 SLC44A1Q8WWI5 657 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 PIK3R3Q92569 461 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 PHF21BQ96EK2 531 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 HIST1H2AHQ96KK5 128 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 SIGLEC10Q96LC7 697 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 TMEM74Q96NL1 305 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 C12orf57Q99622 126 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 HIST1H2AJQ99878 128 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 MCMBPQ9BTE3 642 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 H2AFJQ9BTM1 129 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 FAM60AQ9NP50 221 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 SDHAF3Q9NRP4 125 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 RAD18Q9NS91 495 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 RSL24D1Q9UHA3 163 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 KCND3Q9UK17 655 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 CCDC168Q8NDH2 2452 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 SNRNP200O75643 2136 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 CCDC187A0A096LP49 1063 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 OR2B3O76000 313 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 STK17BO94768 372 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 UNC5CO95185 931 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 FCER2P06734 321 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 ACP1P24666 158 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 CRABP2P29373 138 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 UQCRC1P31930 480 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 CHN2P52757 468 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 EMP3P54852 163 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 CHRNEQ04844 493 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 PAPD7Q5XG87 772 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 PWWP2BQ6NUJ5 590 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 BNC2Q6ZN30 1099 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 PROSER1Q86XN7 944 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 LURAP1LQ8IV03 231 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 IQCKQ8N0W5 287 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 ZBTB2Q8N680 514 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 NAT8LQ8N9F0 302 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 OR2L2Q8NH16 312 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 RELTQ969Z4 430 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 ZDHHC12Q96GR4 267 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 ZNF486Q96H40 463 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 EBNA1BP2Q99848 306 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 C12orf65Q9H3J6 166 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 ZNF358Q9NW07 568 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms