RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 ZNF282Q9UDV7 671 aaPredicted RBP28.01■■■□□ 2.07
LIMCH1-211ENST00000509638 SCN2AQ99250 2005 aa28.01■■■□□ 2.07
LIMCH1-211ENST00000509638 C21orf140B9A014 251 aa28■■■□□ 2.07
LIMCH1-211ENST00000509638 GBAP04062 536 aa28■■■□□ 2.07
LIMCH1-211ENST00000509638 BTKQ06187 659 aa28■■■□□ 2.07
LIMCH1-211ENST00000509638 DNASE1L3Q13609 305 aa28■■■□□ 2.07
LIMCH1-211ENST00000509638 SPIN4Q56A73 249 aa28■■■□□ 2.07
LIMCH1-211ENST00000509638 OVCH1Q7RTY7 1134 aa28■■■□□ 2.07
LIMCH1-211ENST00000509638 ENDOVQ8N8Q3 282 aaKnown RBP28■■■□□ 2.07
LIMCH1-211ENST00000509638 OR51Q1Q8NH59 317 aa28■■■□□ 2.07
LIMCH1-211ENST00000509638 PPP1R36Q96LQ0 422 aa28■■■□□ 2.07
LIMCH1-211ENST00000509638 RBCK1Q9BYM8 510 aa28■■■□□ 2.07
LIMCH1-211ENST00000509638 DDX31Q9H8H2 851 aaKnown RBP28■■■□□ 2.07
LIMCH1-211ENST00000509638 ACACBO00763 2458 aa28■■■□□ 2.07
LIMCH1-211ENST00000509638 TCP11X1B4DZS4 312 aa27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 TERTO14746 1132 aaKnown RBP27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 CNOT3O75175 753 aaKnown RBP27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 MDH1P40925 334 aaKnown RBP27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 XCR1P46094 333 aa27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 ACSM2AQ08AH3 577 aa27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 ACSM2BQ68CK6 577 aa27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 MRPL14Q6P1L8 145 aaKnown RBP27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 Q6ZSR9 355 aa27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 PAGE2Q7Z2X7 111 aa27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 CA13Q8N1Q1 262 aa27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 ZCCHC7Q8N3Z6 543 aaKnown RBP27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 PIWIL2Q8TC59 973 aaKnown RBP27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 ZCCHC14Q8WYQ9 949 aaKnown RBP27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 KIAA1143Q96AT1 154 aaPredicted RBP27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 C3orf30Q96M34 536 aa27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 CCT7Q99832 543 aa27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 GPN2Q9H9Y4 310 aaPredicted RBP27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 MKKSQ9NPJ1 570 aaPredicted RBP27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 A0A0A6YYD5 115 aa27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 ATP6AP2A0A1C7CYW4 349 aa27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 CHST10O43529 356 aa27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 ATP6AP2O75787 350 aa27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 ALBP02768 609 aa27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 KLK1P06870 262 aa27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 FOXL2P58012 376 aa27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 RUNX2Q13950 521 aa27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 CHTF18Q8WVB6 975 aa27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 PEX11GQ96HA9 241 aa27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 NPLQ9BXD5 320 aaPredicted RBP27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 NUF2Q9BZD4 464 aa27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 SLC26A1Q9H2B4 701 aa27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 CLK4Q9HAZ1 481 aaKnown RBP27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 PFDN4Q9NQP4 134 aa27.99■■■□□ 2.07
LIMCH1-211ENST00000509638 LSM1O15116 133 aaKnown RBP27.98■■■□□ 2.07
LIMCH1-211ENST00000509638 PRPH2P23942 346 aa27.98■■■□□ 2.07
LIMCH1-211ENST00000509638 OCA2Q04671 838 aa27.98■■■□□ 2.07
LIMCH1-211ENST00000509638 ZC3H7AQ8IWR0 971 aaKnown RBP27.98■■■□□ 2.07
LIMCH1-211ENST00000509638 LRTM1Q9HBL6 345 aa27.98■■■□□ 2.07
LIMCH1-211ENST00000509638 ADAM29Q9UKF5 820 aa27.98■■■□□ 2.07
LIMCH1-211ENST00000509638 IGLV3-12A0A075B6K2 115 aa27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 HDAC3O15379 428 aa27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 KLK10O43240 276 aa27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 TMPRSS11DO60235 418 aa27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 RAB40ALP0C0E4 278 aa27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 RNH1P13489 461 aaKnown RBP27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 LIFP15018 202 aa27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 F8A1P23610 371 aa27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 TPP2P29144 1249 aaPredicted RBP27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 LIM2P55344 173 aa27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 RPS15P62841 145 aaKnown RBP27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 FOXK2Q01167 660 aa27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 SLAMF1Q13291 335 aa27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 NKG7Q16617 165 aa27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 GALNTL6Q49A17 601 aa27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 VWA2Q5GFL6 755 aa27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 FAM69BQ5VUD6 431 aa27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 CYP20A1Q6UW02 462 aa27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 SHISA6Q6ZSJ9 500 aa27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 PRSS58Q8IYP2 241 aa27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 STT3BQ8TCJ2 826 aa27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 WDR54Q9H977 334 aa27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 RIC8BQ9NVN3 520 aa27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 C1orf109Q9NX04 203 aa27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 GIMAP2Q9UG22 337 aa27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 DAPP1Q9UN19 280 aa27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 PADI2Q9Y2J8 665 aa27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 TPRP12270 2363 aaKnown RBP27.97■■■□□ 2.07
LIMCH1-211ENST00000509638 ARHGAP10A1A4S6 786 aa27.96■■■□□ 2.07
LIMCH1-211ENST00000509638 NPIPB8E9PQR5 432 aa27.96■■■□□ 2.07
LIMCH1-211ENST00000509638 RPS18P62269 152 aaKnown RBP27.96■■■□□ 2.07
LIMCH1-211ENST00000509638 SRSF6Q13247 344 aaKnown RBP27.96■■■□□ 2.07
LIMCH1-211ENST00000509638 DCBLD2Q96PD2 775 aa27.96■■■□□ 2.07
LIMCH1-211ENST00000509638 SPSB2Q99619 263 aa27.96■■■□□ 2.07
LIMCH1-211ENST00000509638 MAPKAP1Q9BPZ7 522 aa27.96■■■□□ 2.07
LIMCH1-211ENST00000509638 EBPLQ9BY08 206 aa27.96■■■□□ 2.07
LIMCH1-211ENST00000509638 DPH1Q9BZG8 443 aa27.96■■■□□ 2.07
LIMCH1-211ENST00000509638 ACTL8Q9H568 366 aa27.96■■■□□ 2.07
LIMCH1-211ENST00000509638 CCDC134Q9H6E4 229 aa27.96■■■□□ 2.07
LIMCH1-211ENST00000509638 SOX17Q9H6I2 414 aaPredicted RBP27.96■■■□□ 2.07
LIMCH1-211ENST00000509638 LYRM4Q9HD34 91 aa27.96■■■□□ 2.07
LIMCH1-211ENST00000509638 C14orf105Q9NVL8 296 aa27.96■■■□□ 2.07
LIMCH1-211ENST00000509638 VTI1BQ9UEU0 232 aa27.96■■■□□ 2.07
LIMCH1-211ENST00000509638 IL17BQ9UHF5 180 aa27.96■■■□□ 2.07
LIMCH1-211ENST00000509638 NXT1Q9UKK6 140 aaKnown RBP27.96■■■□□ 2.07
LIMCH1-211ENST00000509638 RAXQ9Y2V3 346 aa27.96■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms