RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 EFCAB10A6NFE3 127 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 SNAP29O95721 258 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 PVRP15151 417 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 GM2AP17900 193 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 SRP54P61011 504 aaKnown RBP13.5□□□□□ -0.25
TCOF1-207ENST00000504761 RPA4Q13156 261 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 ZNF630Q2M218 657 aaPredicted RBP13.5□□□□□ -0.25
TCOF1-207ENST00000504761 FAM219BQ5XKK7 198 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 FIGLAQ6QHK4 219 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 TMEM107Q6UX40 140 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 RANBP3LQ86VV4 465 aaPredicted RBP13.5□□□□□ -0.25
TCOF1-207ENST00000504761 PIGXQ8TBF5 258 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 FGF14Q92915 247 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 ZNF347Q96SE7 839 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 KCNK12Q9HB15 430 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 COPS7AQ9UBW8 275 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 TNFRSF1BP20333 461 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 FUT4P22083 530 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 METAP1P53582 386 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.5□□□□□ -0.25
TCOF1-207ENST00000504761 ARHGAP40Q5TG30 622 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 KCTD8Q6ZWB6 473 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 C6orf120Q7Z4R8 191 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 CSNK1A1LQ8N752 337 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 OR5M3Q8NGP4 307 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 CIDECQ96AQ7 238 aaPredicted RBP13.5□□□□□ -0.25
TCOF1-207ENST00000504761 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.5□□□□□ -0.25
TCOF1-207ENST00000504761 OR51V1Q9H2C8 321 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 CCM2LQ9NUG4 571 aaPredicted RBP13.5□□□□□ -0.25
TCOF1-207ENST00000504761 PTGFRNQ9P2B2 879 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 MRTO4Q9UKD2 239 aaKnown RBP13.5□□□□□ -0.25
TCOF1-207ENST00000504761 WDR45Q9Y484 360 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 SCN4AP35499 1836 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 OR7A17O14581 309 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 HOXC11O43248 304 aaPredicted RBP13.5□□□□□ -0.25
TCOF1-207ENST00000504761 EGFP01133 1207 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 ALOX12P18054 663 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 HTR1EP28566 365 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 IMPA1P29218 277 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 MADCAM1Q13477 382 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 ATG9BQ674R7 924 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 OGFOD2Q6N063 350 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 Q6ZSR9 355 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 RETREG3Q86VR2 466 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 CCDC103Q8IW40 242 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 ASB1Q9Y576 335 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 PLXNB2O15031 1838 aa13.5□□□□□ -0.25
TCOF1-207ENST00000504761 SCAMP2O15127 329 aaKnown RBP13.49□□□□□ -0.25
TCOF1-207ENST00000504761 CH25HO95992 272 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 ZSWIM9Q86XI8 627 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 RNF168Q8IYW5 571 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-207ENST00000504761 PLAC1Q9HBJ0 212 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 CCNB1IP1Q9NPC3 277 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 PPIEQ9UNP9 301 aaKnown RBP13.49□□□□□ -0.25
TCOF1-207ENST00000504761 FAM86C2PA6NEL3 165 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 H1F0P07305 194 aaKnown RBP13.49□□□□□ -0.25
TCOF1-207ENST00000504761 PIK3CBP42338 1070 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 ABATP80404 500 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 TIMM50Q3ZCQ8 353 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 NDUFAF5Q5TEU4 345 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 DTWD1Q8N5C7 304 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 ISL2Q96A47 359 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 C1GALT1C1Q96EU7 318 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 C5orf34Q96MH7 638 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 INSM2Q96T92 566 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-207ENST00000504761 TMEM168Q9H0V1 697 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 HCN3Q9P1Z3 774 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 ANKMY1Q9P2S6 941 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 PLEKHM1Q9Y4G2 1056 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 LRRC42Q9Y546 428 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 ANXA8P13928 327 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 IL12BP29460 328 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 ARRB2P32121 409 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 MAGEA12P43365 314 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 ARSFP54793 590 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 CSNK2BP67870 215 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 NKX3-2P78367 333 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 CAMK1Q14012 370 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 RCAN2Q14206 197 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 DEFB133Q30KQ1 61 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 OR4C11Q6IEV9 310 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 TDHQ8IZJ6 230 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 OR2T11Q8NH01 316 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 TOR3AQ9H497 397 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 STARD5Q9NSY2 213 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 SCML1Q9UN30 329 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 PCDHB3Q9Y5E6 796 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 COMMD3-BMI1R4GMX3 469 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 OR5K4A6NMS3 321 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 LSM1O15116 133 aaKnown RBP13.49□□□□□ -0.25
TCOF1-207ENST00000504761 TPP2P29144 1249 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-207ENST00000504761 ACVR1Q04771 509 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 GPNMBQ14956 572 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 SPANXN2Q5MJ10 180 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 C10orf62Q5T681 223 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-207ENST00000504761 SH2D5Q6ZV89 423 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 TMEM150AQ86TG1 271 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 RASGRP3Q8IV61 690 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 SIX5Q8N196 739 aa13.49□□□□□ -0.25
TCOF1-207ENST00000504761 NATD1Q8N6N6 113 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms