RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 ACTL8Q9H568 366 aa11.26□□□□□ -0.61
PDLIM5-208ENST00000504489 NMRK1Q9NWW6 199 aa11.26□□□□□ -0.61
PDLIM5-208ENST00000504489 CTSFQ9UBX1 484 aa11.26□□□□□ -0.61
PDLIM5-208ENST00000504489 NXT1Q9UKK6 140 aaKnown RBP11.26□□□□□ -0.61
PDLIM5-208ENST00000504489 NUP214P35658 2090 aaPredicted RBP11.26□□□□□ -0.61
PDLIM5-208ENST00000504489 CFAP47Q6ZTR5 3102 aa11.26□□□□□ -0.61
PDLIM5-208ENST00000504489 A0A0G2JN53 185 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 ZNF860A6NHJ4 632 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 ZNF891A8MT65 544 aaPredicted RBP11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 SAP18O00422 153 aaKnown RBP11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 PLPP1O14494 284 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 DYNC1I1O14576 645 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 AZIN1O14977 448 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 CHST10O43529 356 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 B3GALT2O43825 422 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 SH3BGRLO75368 114 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 CRCPO75575 148 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 SCELO95171 688 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 BMP10O95393 424 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 BGNP21810 368 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 ATP5A1P25705 553 aaKnown RBP11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 SERPINB3P29508 390 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 BSGP35613 385 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 HTR6P50406 440 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 RAP1GDS1P52306 607 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 TMPRSS3P57727 454 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 ABCE1P61221 599 aaKnown RBP11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 RPS18P62269 152 aaKnown RBP11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 PPP2R2AP63151 447 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 MAT1AQ00266 395 aaKnown RBP11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 STX3Q13277 289 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 RUNX2Q13950 521 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 SSPNQ14714 243 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 ABRAXAS2Q15018 415 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 SYT16Q17RD7 645 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 VWA2Q5GFL6 755 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 OR4C11Q6IEV9 310 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 CCDC81Q6ZN84 652 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 ATG14Q6ZNE5 492 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 MED25Q71SY5 747 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 TRIM46Q7Z4K8 759 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 TRIM42Q8IWZ5 723 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 CLYBLQ8N0X4 340 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 ZSCAN1Q8NBB4 408 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 SNRNP27Q8WVK2 155 aaKnown RBP11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 STARD8Q92502 1023 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 MIEF2Q96C03 454 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 OR1F2PQ96R84 312 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 YIPF2Q9BWQ6 316 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 COPS7BQ9H9Q2 264 aaPredicted RBP11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 C14orf105Q9NVL8 296 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 AHSPQ9NZD4 102 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 HCN3Q9P1Z3 774 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 SLC12A4Q9UP95 1085 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 PTRH2Q9Y3E5 179 aaKnown RBP11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 TRAF6Q9Y4K3 522 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 MRPS18BQ9Y676 258 aaKnown RBP11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 CACNA1BQ00975 2339 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 PCSK5Q92824 1860 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 PKD1L2Q7Z442 2459 aa11.25□□□□□ -0.61
PDLIM5-208ENST00000504489 K7ENP7 123 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 RTCAO00442 366 aaKnown RBP11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 ITM2AO43736 263 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 DNAJB6O75190 326 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 HSPA4LO95757 839 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 CYC1P08574 325 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 RNH1P13489 461 aaKnown RBP11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 HIST1H1TP22492 207 aaPredicted RBP11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 FOLR3P41439 243 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 SSR2P43308 183 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 XCR1P46094 333 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 SLC1A6P48664 564 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 VAC14Q08AM6 782 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 BST1Q10588 318 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 ST3GAL2Q16842 350 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 UGT3A2Q3SY77 523 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 FAM219BQ5XKK7 198 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 KANK2Q63ZY3 851 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 CLEC6AQ6EIG7 209 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 INO80CQ6PI98 192 aaPredicted RBP11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 ZNF793Q6ZN11 406 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 ZC3H7AQ8IWR0 971 aaKnown RBP11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 KIRREL3Q8IZU9 778 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 CA13Q8N1Q1 262 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 METTL4Q8N3J2 472 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 ZCCHC7Q8N3Z6 543 aaKnown RBP11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 ACOT4Q8N9L9 421 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 OR5T3Q8NGG3 340 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 NACC2Q96BF6 587 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 TBC1D20Q96BZ9 403 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 PEX11GQ96HA9 241 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 HBEGFQ99075 208 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 ZNF717Q9BY31 904 aaPredicted RBP11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 ILKAPQ9H0C8 392 aaPredicted RBP11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 DDX31Q9H8H2 851 aaKnown RBP11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 LYRM4Q9HD34 91 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 MED4Q9NPJ6 270 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 VPS29Q9UBQ0 182 aa11.24□□□□□ -0.61
PDLIM5-208ENST00000504489 ZDHHC2Q9UIJ5 367 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms