RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 NLGN4YQ8NFZ3 816 aaPredicted RBP9.51□□□□□ -0.89
NUP54-203ENST00000504173 OR2L5Q8NG80 312 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 OR9A4Q8NGU2 314 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 FAM76AQ8TAV0 307 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 UTP15Q8TED0 518 aaKnown RBP9.51□□□□□ -0.89
NUP54-203ENST00000504173 ZNF75CPQ92670 426 aaPredicted RBP9.51□□□□□ -0.89
NUP54-203ENST00000504173 MS4A6EQ96DS6 147 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 MVB12AQ96EY5 273 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 MMABQ96EY8 250 aaPredicted RBP9.51□□□□□ -0.89
NUP54-203ENST00000504173 FAR2Q96K12 515 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 F2RL3Q96RI0 385 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 HBEGFQ99075 208 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 SERPINI1Q99574 410 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 DPH2Q9BQC3 489 aaPredicted RBP9.51□□□□□ -0.89
NUP54-203ENST00000504173 SPRY4Q9C004 299 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 ILKAPQ9H0C8 392 aaPredicted RBP9.51□□□□□ -0.89
NUP54-203ENST00000504173 OR51B5Q9H339 312 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 FARSBQ9NSD9 589 aaKnown RBP9.51□□□□□ -0.89
NUP54-203ENST00000504173 THAP1Q9NVV9 213 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 ZDHHC2Q9UIJ5 367 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 PADI1Q9ULC6 663 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 PPT2Q9UMR5 302 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 SLC12A4Q9UP95 1085 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 RAP2CQ9Y3L5 183 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 TRAF6Q9Y4K3 522 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 SLC22A7Q9Y694 548 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 MAU2Q9Y6X3 613 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 SDK2Q58EX2 2172 aa9.51□□□□□ -0.89
NUP54-203ENST00000504173 A0A088AWK7 358 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 A0A0G2JN53 185 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 ZNF860A6NHJ4 632 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 TMEM233B4DJY2 109 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.5□□□□□ -0.89
NUP54-203ENST00000504173 C9J4A7 227 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 SGK494L7N484 410 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 SAP18O00422 153 aaKnown RBP9.5□□□□□ -0.89
NUP54-203ENST00000504173 KLF11O14901 512 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 FOXS1O43638 330 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 SNNO75324 88 aaPredicted RBP9.5□□□□□ -0.89
NUP54-203ENST00000504173 KLHL18O94889 574 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 NSA2O95478 260 aaKnown RBP9.5□□□□□ -0.89
NUP54-203ENST00000504173 ETHE1O95571 254 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 B3GALT4O96024 378 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 FGF4P08620 206 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 LIPCP11150 499 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 PIM1P11309 404 aaPredicted RBP9.5□□□□□ -0.89
NUP54-203ENST00000504173 HSD3B1P14060 373 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 ZNF10P21506 573 aaPredicted RBP9.5□□□□□ -0.89
NUP54-203ENST00000504173 FBLP22087 321 aaKnown RBP9.5□□□□□ -0.89
NUP54-203ENST00000504173 HSD3B2P26439 372 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 OR1D4P47884 311 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 CD97P48960 835 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 SNRPNP63162 240 aaKnown RBP9.5□□□□□ -0.89
NUP54-203ENST00000504173 DCDP81605 110 aaKnown RBP9.5□□□□□ -0.89
NUP54-203ENST00000504173 ZNF33BQ06732 778 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 CSTF3Q12996 717 aaKnown RBP9.5□□□□□ -0.89
NUP54-203ENST00000504173 CUL3Q13618 768 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 ABRAXAS2Q15018 415 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 IMPG1Q17R60 797 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 ADPRMQ3LIE5 342 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 NKAIN1Q4KMZ8 207 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 ZNF385CQ66K41 422 aaPredicted RBP9.5□□□□□ -0.89
NUP54-203ENST00000504173 NIPAL1Q6NVV3 410 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 ABHD17CQ6PCB6 329 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 SCIMPQ6UWF3 145 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 PRSS41Q7RTY9 318 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 CACNA2D3Q8IZS8 1091 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 KIRREL3Q8IZU9 778 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 CLYBLQ8N0X4 340 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 AFAP1L2Q8N4X5 818 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 IL22RA1Q8N6P7 574 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 ZNF781Q8N8C0 355 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 GBP7Q8N8V2 638 aaPredicted RBP9.5□□□□□ -0.89
NUP54-203ENST00000504173 SRFBP1Q8NEF9 429 aaKnown RBP9.5□□□□□ -0.89
NUP54-203ENST00000504173 TWIST2Q8WVJ9 160 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.5□□□□□ -0.89
NUP54-203ENST00000504173 RGMAQ96B86 450 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 KCNC2Q96PR1 638 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 SORT1Q99523 831 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 C17orf62Q9BQA9 187 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 YIPF2Q9BWQ6 316 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 C20orf27Q9GZN8 174 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 AICDAQ9GZX7 198 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 CHST8Q9H2A9 424 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 ADNPQ9H2P0 1102 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 COPS7BQ9H9Q2 264 aaPredicted RBP9.5□□□□□ -0.89
NUP54-203ENST00000504173 BRF2Q9HAW0 419 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 ZNF304Q9HCX3 659 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 LHX9Q9NQ69 397 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 NMRK1Q9NWW6 199 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 PSD3Q9NYI0 1048 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 IFT80Q9P2H3 777 aaPredicted RBP9.5□□□□□ -0.89
NUP54-203ENST00000504173 ANAPC2Q9UJX6 822 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.5□□□□□ -0.89
NUP54-203ENST00000504173 NAALAD2Q9Y3Q0 740 aa9.5□□□□□ -0.89
NUP54-203ENST00000504173 SPG11Q96JI7 2443 aa9.49□□□□□ -0.89
NUP54-203ENST00000504173 C4orf51C9J302 202 aa9.49□□□□□ -0.89
NUP54-203ENST00000504173 H0YIG0 161 aa9.49□□□□□ -0.89
NUP54-203ENST00000504173 RTCAO00442 366 aaKnown RBP9.49□□□□□ -0.89
NUP54-203ENST00000504173 GALR3O60755 368 aaPredicted RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms