RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 TRAFD1O14545 582 aaPredicted RBP4.49□□□□□ -1.69
SF3B1-212ENST00000496458 NDC80O14777 642 aa4.49□□□□□ -1.69
SF3B1-212ENST00000496458 PSMA7O14818 248 aa4.49□□□□□ -1.69
SF3B1-212ENST00000496458 PRAF2O60831 178 aa4.49□□□□□ -1.69
SF3B1-212ENST00000496458 LRCH4O75427 683 aa4.49□□□□□ -1.69
SF3B1-212ENST00000496458 C4BPBP20851 252 aa4.49□□□□□ -1.69
SF3B1-212ENST00000496458 GPR183P32249 361 aa4.49□□□□□ -1.69
SF3B1-212ENST00000496458 SLMAPQ14BN4 828 aa4.49□□□□□ -1.69
SF3B1-212ENST00000496458 RAB12Q6IQ22 244 aa4.49□□□□□ -1.69
SF3B1-212ENST00000496458 FAM166AQ6J272 317 aa4.49□□□□□ -1.69
SF3B1-212ENST00000496458 TIPARPQ7Z3E1 657 aaKnown RBP4.49□□□□□ -1.69
SF3B1-212ENST00000496458 PIWIL3Q7Z3Z3 882 aaKnown RBP4.49□□□□□ -1.69
SF3B1-212ENST00000496458 OR4N5Q8IXE1 308 aa4.49□□□□□ -1.69
SF3B1-212ENST00000496458 APCDD1Q8J025 514 aa4.49□□□□□ -1.69
SF3B1-212ENST00000496458 OR9Q2Q8NGE9 314 aa4.49□□□□□ -1.69
SF3B1-212ENST00000496458 SLC26A7Q8TE54 656 aa4.49□□□□□ -1.69
SF3B1-212ENST00000496458 CASP10Q92851 521 aa4.49□□□□□ -1.69
SF3B1-212ENST00000496458 IL12RB2Q99665 862 aa4.49□□□□□ -1.69
SF3B1-212ENST00000496458 COPS7BQ9H9Q2 264 aaPredicted RBP4.49□□□□□ -1.69
SF3B1-212ENST00000496458 GPR83Q9NYM4 423 aa4.49□□□□□ -1.69
SF3B1-212ENST00000496458 MOSPD1Q9UJG1 213 aa4.49□□□□□ -1.69
SF3B1-212ENST00000496458 IKBKGQ9Y6K9 419 aa4.49□□□□□ -1.69
SF3B1-212ENST00000496458 MAPKBP1O60336 1514 aa4.49□□□□□ -1.69
SF3B1-212ENST00000496458 ATP10BO94823 1461 aa4.49□□□□□ -1.69
SF3B1-212ENST00000496458 ABCC10Q5T3U5 1492 aa4.49□□□□□ -1.69
SF3B1-212ENST00000496458 CEP162Q5TB80 1403 aa4.48□□□□□ -1.69
SF3B1-212ENST00000496458 FMN1Q68DA7 1419 aa4.48□□□□□ -1.69
SF3B1-212ENST00000496458 DDX39AO00148 427 aaKnown RBP4.48□□□□□ -1.69
SF3B1-212ENST00000496458 RECQL5O94762 991 aaPredicted RBP4.48□□□□□ -1.69
SF3B1-212ENST00000496458 GUCA1CO95843 209 aa4.48□□□□□ -1.69
SF3B1-212ENST00000496458 PCP11498 1178 aaKnown RBP4.48□□□□□ -1.69
SF3B1-212ENST00000496458 PIK3R1P27986 724 aa4.48□□□□□ -1.69
SF3B1-212ENST00000496458 ZFP36L2P47974 494 aaKnown RBP4.48□□□□□ -1.69
SF3B1-212ENST00000496458 ATP4BP51164 291 aa4.48□□□□□ -1.69
SF3B1-212ENST00000496458 MFAP3P55082 362 aa4.48□□□□□ -1.69
SF3B1-212ENST00000496458 ERVK-16P61578 105 aa4.48□□□□□ -1.69
SF3B1-212ENST00000496458 TAZQ16635 292 aa4.48□□□□□ -1.69
SF3B1-212ENST00000496458 ZNF674Q2M3X9 581 aa4.48□□□□□ -1.69
SF3B1-212ENST00000496458 FAM174BQ3ZCQ3 159 aa4.48□□□□□ -1.69
SF3B1-212ENST00000496458 Q6ZR54 194 aa4.48□□□□□ -1.69
SF3B1-212ENST00000496458 C11orf57Q6ZUT1 292 aaPredicted RBP4.48□□□□□ -1.69
SF3B1-212ENST00000496458 C5orf24Q7Z6I8 188 aa4.48□□□□□ -1.69
SF3B1-212ENST00000496458 PRSS35Q8N3Z0 413 aa4.48□□□□□ -1.69
SF3B1-212ENST00000496458 IQUBQ8NA54 791 aa4.48□□□□□ -1.69
SF3B1-212ENST00000496458 SPPL2AQ8TCT8 520 aa4.48□□□□□ -1.69
SF3B1-212ENST00000496458 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.48□□□□□ -1.69
SF3B1-212ENST00000496458 EXOC4Q96A65 974 aa4.48□□□□□ -1.69
SF3B1-212ENST00000496458 CABS1Q96KC9 395 aa4.48□□□□□ -1.69
SF3B1-212ENST00000496458 ACAT2Q9BWD1 397 aa4.48□□□□□ -1.69
SF3B1-212ENST00000496458 KLK11Q9UBX7 282 aa4.48□□□□□ -1.69
SF3B1-212ENST00000496458 NUP153P49790 1475 aaKnown RBP4.48□□□□□ -1.69
SF3B1-212ENST00000496458 IQCMA0A1B0GVH7 501 aa4.47□□□□□ -1.69
SF3B1-212ENST00000496458 E5RGE8 158 aa4.47□□□□□ -1.69
SF3B1-212ENST00000496458 GALR3O60755 368 aaPredicted RBP4.47□□□□□ -1.69
SF3B1-212ENST00000496458 MTRF1O75570 445 aaKnown RBP4.47□□□□□ -1.69
SF3B1-212ENST00000496458 PKLRP30613 574 aa4.47□□□□□ -1.69
SF3B1-212ENST00000496458 ANP32AP39687 249 aaKnown RBP4.47□□□□□ -1.69
SF3B1-212ENST00000496458 GP5P40197 560 aa4.47□□□□□ -1.69
SF3B1-212ENST00000496458 BTG1P62324 171 aa4.47□□□□□ -1.69
SF3B1-212ENST00000496458 IL10RBQ08334 325 aa4.47□□□□□ -1.69
SF3B1-212ENST00000496458 ZNF273Q14593 569 aa4.47□□□□□ -1.69
SF3B1-212ENST00000496458 UPP1Q16831 310 aa4.47□□□□□ -1.69
SF3B1-212ENST00000496458 C15orf32Q32M92 178 aa4.47□□□□□ -1.69
SF3B1-212ENST00000496458 DHRS11Q6UWP2 260 aa4.47□□□□□ -1.69
SF3B1-212ENST00000496458 CCDC186Q7Z3E2 898 aa4.47□□□□□ -1.69
SF3B1-212ENST00000496458 ADCK2Q7Z695 626 aa4.47□□□□□ -1.69
SF3B1-212ENST00000496458 ABI3BPQ7Z7G0 1075 aa4.47□□□□□ -1.69
SF3B1-212ENST00000496458 PRUNE1Q86TP1 453 aa4.47□□□□□ -1.69
SF3B1-212ENST00000496458 METTL23Q86XA0 190 aa4.47□□□□□ -1.69
SF3B1-212ENST00000496458 CROCCP3Q8IVE0 287 aa4.47□□□□□ -1.69
SF3B1-212ENST00000496458 PHC2Q8IXK0 858 aa4.47□□□□□ -1.69
SF3B1-212ENST00000496458 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.47□□□□□ -1.69
SF3B1-212ENST00000496458 CITED2Q99967 270 aaPredicted RBP4.47□□□□□ -1.69
SF3B1-212ENST00000496458 ADNPQ9H2P0 1102 aa4.47□□□□□ -1.69
SF3B1-212ENST00000496458 IARS2Q9NSE4 1012 aaKnown RBP4.47□□□□□ -1.69
SF3B1-212ENST00000496458 EXOC1Q9NV70 894 aa4.47□□□□□ -1.69
SF3B1-212ENST00000496458 SNX7Q9UNH6 387 aa4.47□□□□□ -1.69
SF3B1-212ENST00000496458 NSG2Q9Y328 171 aa4.47□□□□□ -1.69
SF3B1-212ENST00000496458 WDR7Q9Y4E6 1490 aa4.47□□□□□ -1.69
SF3B1-212ENST00000496458 DIP2BQ9P265 1576 aa4.47□□□□□ -1.69
SF3B1-212ENST00000496458 RNF123Q5XPI4 1314 aa4.46□□□□□ -1.69
SF3B1-212ENST00000496458 EPRSP07814 1512 aaKnown RBP4.46□□□□□ -1.69
SF3B1-212ENST00000496458 CDK13Q14004 1512 aaKnown RBP4.46□□□□□ -1.69
SF3B1-212ENST00000496458 CCDC188H7C350 402 aa4.46□□□□□ -1.7
SF3B1-212ENST00000496458 SPP1P10451 314 aa4.46□□□□□ -1.7
SF3B1-212ENST00000496458 GAP43P17677 238 aa4.46□□□□□ -1.7
SF3B1-212ENST00000496458 BCL3P20749 454 aa4.46□□□□□ -1.7
SF3B1-212ENST00000496458 GIFP27352 417 aa4.46□□□□□ -1.7
SF3B1-212ENST00000496458 MAPK3P27361 379 aaPredicted RBP4.46□□□□□ -1.7
SF3B1-212ENST00000496458 SSTR1P30872 391 aa4.46□□□□□ -1.7
SF3B1-212ENST00000496458 NDUFV3P56181 108 aaKnown RBP4.46□□□□□ -1.7
SF3B1-212ENST00000496458 UGCGQ16739 394 aa4.46□□□□□ -1.7
SF3B1-212ENST00000496458 C2orf76Q3KRA6 126 aa4.46□□□□□ -1.7
SF3B1-212ENST00000496458 SPANXN4Q5MJ08 99 aa4.46□□□□□ -1.7
SF3B1-212ENST00000496458 C6orf136Q5SQH8 315 aa4.46□□□□□ -1.7
SF3B1-212ENST00000496458 SEL1L3Q68CR1 1132 aa4.46□□□□□ -1.7
SF3B1-212ENST00000496458 ERN2Q76MJ5 926 aaKnown RBP4.46□□□□□ -1.7
SF3B1-212ENST00000496458 C10orf53Q8N6V4 93 aa4.46□□□□□ -1.7
SF3B1-212ENST00000496458 KIF18AQ8NI77 898 aa4.46□□□□□ -1.7
SF3B1-212ENST00000496458 SPATA18Q8TC71 538 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms