RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 ZNF793Q6ZN11 406 aa16.29■□□□□ 0.2
LIME1-208ENST00000493265 COMMD6Q7Z4G1 85 aa16.29■□□□□ 0.2
LIME1-208ENST00000493265 HOMEZQ8IX15 550 aa16.29■□□□□ 0.2
LIME1-208ENST00000493265 METTL4Q8N3J2 472 aa16.29■□□□□ 0.2
LIME1-208ENST00000493265 OR5T3Q8NGG3 340 aa16.29■□□□□ 0.2
LIME1-208ENST00000493265 CHTF18Q8WVB6 975 aa16.29■□□□□ 0.2
LIME1-208ENST00000493265 MR1Q95460 341 aa16.29■□□□□ 0.2
LIME1-208ENST00000493265 SMIM10Q96HG1 83 aa16.29■□□□□ 0.2
LIME1-208ENST00000493265 CCT7Q99832 543 aa16.29■□□□□ 0.2
LIME1-208ENST00000493265 TRIM55Q9BYV6 548 aa16.29■□□□□ 0.2
LIME1-208ENST00000493265 AKTIPQ9H8T0 292 aa16.29■□□□□ 0.2
LIME1-208ENST00000493265 MEAF6Q9HAF1 191 aa16.29■□□□□ 0.2
LIME1-208ENST00000493265 LHX9Q9NQ69 397 aa16.29■□□□□ 0.2
LIME1-208ENST00000493265 PRDM7Q9NQW5 492 aa16.29■□□□□ 0.2
LIME1-208ENST00000493265 C1orf109Q9NX04 203 aa16.29■□□□□ 0.2
LIME1-208ENST00000493265 ADAM21Q9UKJ8 722 aa16.29■□□□□ 0.2
LIME1-208ENST00000493265 POLR3HQ9Y535 204 aaPredicted RBP16.29■□□□□ 0.2
LIME1-208ENST00000493265 SCN3AQ9NY46 2000 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 KALRNO60229 2985 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 A0A088AWK7 358 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 A0A0G2JND7 137 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 ARHGAP10A1A4S6 786 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 GMNCA6NCL1 334 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 ZNF195O14628 629 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 LSM1O15116 133 aaKnown RBP16.28■□□□□ 0.2
LIME1-208ENST00000493265 ATXN7O15265 892 aaPredicted RBP16.28■□□□□ 0.2
LIME1-208ENST00000493265 B3GALT2O43825 422 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 SEMA3DO95025 777 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 ZNF10P21506 573 aaPredicted RBP16.28■□□□□ 0.2
LIME1-208ENST00000493265 FBLP22087 321 aaKnown RBP16.28■□□□□ 0.2
LIME1-208ENST00000493265 BSGP35613 385 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 MTTPP55157 894 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 ABHD18Q0P651 414 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 FAM53BQ14153 422 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 SYT16Q17RD7 645 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 SPIN4Q56A73 249 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 CCNYL2Q5T2Q4 361 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 CGB2Q6NT52 195 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 FAM199XQ6PEV8 388 aaPredicted RBP16.28■□□□□ 0.2
LIME1-208ENST00000493265 CYP20A1Q6UW02 462 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 C6orf15Q6UXA7 325 aaPredicted RBP16.28■□□□□ 0.2
LIME1-208ENST00000493265 RIPOR1Q6ZS17 1223 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 RNF165Q6ZSG1 346 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 PAGE2Q7Z2X7 111 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 NUDT13Q86X67 352 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 SHISA5Q8N114 240 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 ACOT4Q8N9L9 421 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 CDC26Q8NHZ8 85 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 PPP3R2Q96LZ3 170 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 QRFPRQ96P65 431 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 C1orf50Q9BV19 199 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 AKIRIN1Q9H9L7 192 aaPredicted RBP16.28■□□□□ 0.2
LIME1-208ENST00000493265 ZNF304Q9HCX3 659 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 ENAMQ9NRM1 1142 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 FBXW2Q9UKT8 454 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 G3BP2Q9UN86 482 aaKnown RBP16.28■□□□□ 0.2
LIME1-208ENST00000493265 CDC14AQ9UNH5 594 aa16.28■□□□□ 0.2
LIME1-208ENST00000493265 TMEM184BQ9Y519 407 aaPredicted RBP16.28■□□□□ 0.2
LIME1-208ENST00000493265 GNG14A0A1W2PPG7 69 aa16.27■□□□□ 0.2
LIME1-208ENST00000493265 MEN1O00255 615 aa16.27■□□□□ 0.2
LIME1-208ENST00000493265 NVLO15381 856 aaKnown RBP16.27■□□□□ 0.2
LIME1-208ENST00000493265 PCDH7O60245 1069 aa16.27■□□□□ 0.2
LIME1-208ENST00000493265 MYO1DO94832 1006 aa16.27■□□□□ 0.2
LIME1-208ENST00000493265 NSA2O95478 260 aaKnown RBP16.27■□□□□ 0.2
LIME1-208ENST00000493265 KLK3P07288 261 aaPredicted RBP16.27■□□□□ 0.2
LIME1-208ENST00000493265 ITGAXP20702 1163 aa16.27■□□□□ 0.2
LIME1-208ENST00000493265 AGXTP21549 392 aa16.27■□□□□ 0.2
LIME1-208ENST00000493265 HIST1H1TP22492 207 aaPredicted RBP16.27■□□□□ 0.2
LIME1-208ENST00000493265 IDH3AP50213 366 aa16.27■□□□□ 0.2
LIME1-208ENST00000493265 SKP1P63208 163 aa16.27■□□□□ 0.2
LIME1-208ENST00000493265 DCDP81605 110 aaKnown RBP16.27■□□□□ 0.2
LIME1-208ENST00000493265 SLAMF1Q13291 335 aa16.27■□□□□ 0.2
LIME1-208ENST00000493265 NKAIN1Q4KMZ8 207 aa16.27■□□□□ 0.2
LIME1-208ENST00000493265 RFTN2Q52LD8 501 aaPredicted RBP16.27■□□□□ 0.2
LIME1-208ENST00000493265 LCN10Q6JVE6 187 aa16.27■□□□□ 0.2
LIME1-208ENST00000493265 EPGNQ6UW88 154 aa16.27■□□□□ 0.2
LIME1-208ENST00000493265 TIPARPQ7Z3E1 657 aaKnown RBP16.27■□□□□ 0.2
LIME1-208ENST00000493265 CPLX4Q7Z7G2 160 aa16.27■□□□□ 0.2
LIME1-208ENST00000493265 DSELQ8IZU8 1212 aa16.27■□□□□ 0.2
LIME1-208ENST00000493265 FNDC5Q8NAU1 212 aa16.27■□□□□ 0.2
LIME1-208ENST00000493265 SNIP1Q8TAD8 396 aaKnown RBP16.27■□□□□ 0.2
LIME1-208ENST00000493265 GBP5Q96PP8 586 aa16.27■□□□□ 0.2
LIME1-208ENST00000493265 OR52B2Q96RD2 323 aa16.27■□□□□ 0.2
LIME1-208ENST00000493265 SERINC2Q96SA4 455 aa16.27■□□□□ 0.2
LIME1-208ENST00000493265 EBF4Q9BQW3 602 aa16.27■□□□□ 0.2
LIME1-208ENST00000493265 ZNF717Q9BY31 904 aaPredicted RBP16.27■□□□□ 0.2
LIME1-208ENST00000493265 RBCK1Q9BYM8 510 aa16.27■□□□□ 0.2
LIME1-208ENST00000493265 ROGDIQ9GZN7 287 aa16.27■□□□□ 0.2
LIME1-208ENST00000493265 ASCL3Q9NQ33 180 aa16.27■□□□□ 0.2
LIME1-208ENST00000493265 CDRT15L2A8MXV6 281 aa16.26■□□□□ 0.19
LIME1-208ENST00000493265 CHST10O43529 356 aa16.26■□□□□ 0.19
LIME1-208ENST00000493265 VPS4BO75351 444 aa16.26■□□□□ 0.19
LIME1-208ENST00000493265 DLGAP3O95886 979 aa16.26■□□□□ 0.19
LIME1-208ENST00000493265 ANXA4P09525 319 aaPredicted RBP16.26■□□□□ 0.19
LIME1-208ENST00000493265 CCNYL3P0C7X3 344 aa16.26■□□□□ 0.19
LIME1-208ENST00000493265 TPP2P29144 1249 aaPredicted RBP16.26■□□□□ 0.19
LIME1-208ENST00000493265 TIA1P31483 386 aaKnown RBP eCLIP16.26■□□□□ 0.19
LIME1-208ENST00000493265 RORAP35398 523 aa16.26■□□□□ 0.19
LIME1-208ENST00000493265 MAPK12P53778 367 aa16.26■□□□□ 0.19
LIME1-208ENST00000493265 RAE1P78406 368 aaKnown RBP16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms