RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 CASTP20810 708 aaKnown RBP1.94□□□□□ -2.1
HMGB1-208ENST00000490788 EFNA1P20827 205 aaPredicted RBP1.94□□□□□ -2.1
HMGB1-208ENST00000490788 SYT1P21579 422 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 CD9P21926 228 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 CA6P23280 308 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 SP100P23497 879 aaPredicted RBP1.94□□□□□ -2.1
HMGB1-208ENST00000490788 CHRNA7P36544 502 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 HSD17B2P37059 387 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 CETN2P41208 172 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 EIF2DP41214 584 aaKnown RBP1.94□□□□□ -2.1
HMGB1-208ENST00000490788 WNT5AP41221 380 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 NOVA1P51513 510 aaKnown RBP1.94□□□□□ -2.1
HMGB1-208ENST00000490788 ZNF75DP51815 510 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 MTTPP55157 894 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 TPD52P55327 224 aaPredicted RBP1.94□□□□□ -2.1
HMGB1-208ENST00000490788 KLHL30Q0D2K2 578 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 EPS8Q12929 822 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 ITGB3BPQ13352 177 aaPredicted RBP1.94□□□□□ -2.1
HMGB1-208ENST00000490788 MSLNQ13421 630 aaPredicted RBP1.94□□□□□ -2.1
HMGB1-208ENST00000490788 CUL4AQ13619 759 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 HNRNPDQ14103 355 aaKnown RBP1.94□□□□□ -2.1
HMGB1-208ENST00000490788 DPYSQ14117 519 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 TMEM187Q14656 261 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 PSMD6Q15008 389 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 TEAD2Q15562 447 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 WHAMMP3Q1A5X7 153 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 ANKDD1AQ495B1 522 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 USH1GQ495M9 461 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 CCDC40Q4G0X9 1142 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 TCEAL5Q5H9L2 206 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 DCAF10Q5QP82 559 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 ELFN2Q5R3F8 820 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 CYP4A22Q5TCH4 519 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 ZC2HC1BQ5TFG8 222 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 KRT79Q5XKE5 535 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 KCTD16Q68DU8 428 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 TWF2Q6IBS0 349 aaKnown RBP1.94□□□□□ -2.1
HMGB1-208ENST00000490788 MZT2BQ6NZ67 158 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 FAM228AQ86W67 206 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 UBALD2Q8IYN6 164 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 FAM9CQ8IZT9 166 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 CEP112Q8N8E3 955 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 SPERTQ8NA61 448 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 CNNM3Q8NE01 707 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 KBTBD8Q8NFY9 601 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 OR2AJ1Q8NGZ0 328 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 MOSPD2Q8NHP6 518 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 EXD1Q8NHP7 514 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 CCDC110Q8TBZ0 833 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 LZICQ8WZA0 190 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 GMPPAQ96IJ6 420 aaPredicted RBP1.94□□□□□ -2.1
HMGB1-208ENST00000490788 SEPHS2Q99611 448 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 SYT15Q9BQS2 421 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 ERP44Q9BS26 406 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 MCRIP2Q9BUT9 160 aaKnown RBP1.94□□□□□ -2.1
HMGB1-208ENST00000490788 NUP85Q9BW27 656 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 FUT8Q9BYC5 575 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 PUS3Q9BZE2 481 aaKnown RBP1.94□□□□□ -2.1
HMGB1-208ENST00000490788 VN1R1Q9GZP7 353 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 EGLN1Q9GZT9 426 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 FAM49AQ9H0Q0 323 aaPredicted RBP1.94□□□□□ -2.1
HMGB1-208ENST00000490788 S1PR5Q9H228 398 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 DPAGT1Q9H3H5 408 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 GHITMQ9H3K2 345 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 SLC40A1Q9NP59 571 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 PFDN4Q9NQP4 134 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 GIMAP4Q9NUV9 329 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 ANO10Q9NW15 660 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 FKBP14Q9NWM8 211 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 SPHK1Q9NYA1 384 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 WDR35Q9P2L0 1181 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 RHCGQ9UBD6 479 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 CACNG4Q9UBN1 327 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 POLLQ9UGP5 575 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 ZDHHC2Q9UIJ5 367 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 HOOK1Q9UJC3 728 aaKnown RBP1.94□□□□□ -2.1
HMGB1-208ENST00000490788 MOSPD1Q9UJG1 213 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 TMCO1Q9UM00 188 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 EXOC7Q9UPT5 735 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 EXOGQ9Y2C4 368 aaKnown RBP1.94□□□□□ -2.1
HMGB1-208ENST00000490788 SH3GLB1Q9Y371 365 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 PTRH2Q9Y3E5 179 aaKnown RBP1.94□□□□□ -2.1
HMGB1-208ENST00000490788 HEY1Q9Y5J3 304 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 MAGED1Q9Y5V3 778 aaPredicted RBP1.94□□□□□ -2.1
HMGB1-208ENST00000490788 SNX5Q9Y5X3 404 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 GMEB1Q9Y692 573 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 KIF26BQ2KJY2 2108 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 CREBBPQ92793 2442 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 DMDP11532 3685 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 IGKV3D-20A0A0C4DH25 116 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 A0A0J9YWU9 116 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 LOC101059948A0A1B0GTJ6 334 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 A0A1B0GU03 582 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 A0A1W2PR77 199 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 OR2A25A4D2G3 310 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 ANKUB1A6NFN9 424 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 GOLGA8JA6NMD2 632 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 LRRIQ3A6PVS8 624 aaPredicted RBP1.93□□□□□ -2.1
HMGB1-208ENST00000490788 GOLGA8TH3BQL2 631 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 GOLGA8MH3BSY2 632 aa1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms