RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 PITHD1Q9GZP4 211 aaPredicted RBP16.56■□□□□ 0.24
COL6A1-204ENST00000486023 ACTR8Q9H981 624 aa16.56■□□□□ 0.24
COL6A1-204ENST00000486023 CLK4Q9HAZ1 481 aaKnown RBP16.56■□□□□ 0.24
COL6A1-204ENST00000486023 MMP25Q9NPA2 562 aa16.56■□□□□ 0.24
COL6A1-204ENST00000486023 KLHL1Q9NR64 748 aa16.56■□□□□ 0.24
COL6A1-204ENST00000486023 PRTFDC1Q9NRG1 225 aa16.56■□□□□ 0.24
COL6A1-204ENST00000486023 ABI3Q9P2A4 366 aa16.56■□□□□ 0.24
COL6A1-204ENST00000486023 NUP210LQ5VU65 1888 aa16.55■□□□□ 0.24
COL6A1-204ENST00000486023 A0A087WUV0 522 aaPredicted RBP16.55■□□□□ 0.24
COL6A1-204ENST00000486023 CLDN4O14493 209 aa16.55■□□□□ 0.24
COL6A1-204ENST00000486023 MYO1DO94832 1006 aa16.55■□□□□ 0.24
COL6A1-204ENST00000486023 MYBL2P10244 700 aa16.55■□□□□ 0.24
COL6A1-204ENST00000486023 HNRNPFP52597 415 aaKnown RBP16.55■□□□□ 0.24
COL6A1-204ENST00000486023 MTTPP55157 894 aa16.55■□□□□ 0.24
COL6A1-204ENST00000486023 SLC5A8Q8N695 610 aa16.55■□□□□ 0.24
COL6A1-204ENST00000486023 TMEM52Q8NDY8 209 aa16.55■□□□□ 0.24
COL6A1-204ENST00000486023 THAP3Q8WTV1 239 aaPredicted RBP16.55■□□□□ 0.24
COL6A1-204ENST00000486023 FAR1Q8WVX9 515 aa16.55■□□□□ 0.24
COL6A1-204ENST00000486023 UBE2E3Q969T4 207 aa16.55■□□□□ 0.24
COL6A1-204ENST00000486023 ATP6V1E2Q96A05 226 aa16.55■□□□□ 0.24
COL6A1-204ENST00000486023 PHF21BQ96EK2 531 aa16.55■□□□□ 0.24
COL6A1-204ENST00000486023 WDR34Q96EX3 536 aa16.55■□□□□ 0.24
COL6A1-204ENST00000486023 SERINC2Q96SA4 455 aa16.55■□□□□ 0.24
COL6A1-204ENST00000486023 NPLQ9BXD5 320 aaPredicted RBP16.55■□□□□ 0.24
COL6A1-204ENST00000486023 OR51B5Q9H339 312 aa16.55■□□□□ 0.24
COL6A1-204ENST00000486023 OLAHQ9NV23 265 aa16.55■□□□□ 0.24
COL6A1-204ENST00000486023 COPG2Q9UBF2 871 aa16.55■□□□□ 0.24
COL6A1-204ENST00000486023 UTP20O75691 2785 aaKnown RBP16.55■□□□□ 0.24
COL6A1-204ENST00000486023 CNTRLQ7Z7A1 2325 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 TCRBV16S1A1N1A0A5B0 115 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 TRIM49D1C9J1S8 452 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 PRAMEF2O60811 474 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 KRT38O76015 456 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 SIX3O95343 332 aaPredicted RBP16.54■□□□□ 0.24
COL6A1-204ENST00000486023 IFNA16P05015 189 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 PPP2R1BP30154 601 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 SERPINB9P50453 376 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 ALDH18A1P54886 795 aaKnown RBP16.54■□□□□ 0.24
COL6A1-204ENST00000486023 LIM2P55344 173 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 RAB38P57729 211 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 SETDB1Q15047 1291 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 TBCCQ15814 346 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 AP5B1Q2VPB7 878 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 TEX35Q5T0J7 233 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 SPINK14Q6IE38 97 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 CHSY3Q70JA7 882 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 BCORP1Q8N888 145 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 PTGR2Q8N8N7 351 aaPredicted RBP16.54■□□□□ 0.24
COL6A1-204ENST00000486023 OR7G3Q8NG95 312 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 ZNF473Q8WTR7 871 aaKnown RBP16.54■□□□□ 0.24
COL6A1-204ENST00000486023 SEC16BQ96JE7 1060 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 QRFPRQ96P65 431 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 GPR78Q96P69 363 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 CSF3RQ99062 836 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 MTERF1Q99551 399 aaKnown RBP16.54■□□□□ 0.24
COL6A1-204ENST00000486023 NPAS2Q99743 824 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 UTP23Q9BRU9 249 aaKnown RBP16.54■□□□□ 0.24
COL6A1-204ENST00000486023 SORBS1Q9BX66 1292 aaKnown RBP16.54■□□□□ 0.24
COL6A1-204ENST00000486023 IPPKQ9H8X2 491 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 PRDM7Q9NQW5 492 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 FBXW2Q9UKT8 454 aa16.54■□□□□ 0.24
COL6A1-204ENST00000486023 MRPS33Q9Y291 106 aaKnown RBP16.54■□□□□ 0.24
COL6A1-204ENST00000486023 EXOC1LA0A1B0GW35 172 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 CLEC18AA5D8T8 446 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 SAGE2PA6NJ88 616 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 GABRR3A8MPY1 467 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 RASAL1O95294 804 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 CD96P40200 585 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 CASP2P42575 452 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 PIK3CGP48736 1102 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 RAP1GDS1P52306 607 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 PMP22Q01453 160 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 TUBA3CQ13748 450 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 GTF2H2Q13888 395 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 CPSF6Q16630 551 aaKnown RBP eCLIP16.53■□□□□ 0.24
COL6A1-204ENST00000486023 ADPRMQ3LIE5 342 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 ZNF766Q5HY98 468 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 H3F3CQ6NXT2 135 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 GTF2H2CQ6P1K8 395 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 TUBA3EQ6PEY2 450 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 CLEC18BQ6UXF7 455 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 GOLGA7Q7Z5G4 137 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 UBE3DQ7Z6J8 389 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 RPS19BP1Q86WX3 136 aaKnown RBP16.53■□□□□ 0.24
COL6A1-204ENST00000486023 CLEC18CQ8NCF0 446 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 SSC4DQ8WTU2 575 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 UBTD2Q8WUN7 234 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 MTFMTQ96DP5 389 aaKnown RBP16.53■□□□□ 0.24
COL6A1-204ENST00000486023 SIGLEC12Q96PQ1 595 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 KCNC2Q96PR1 638 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 TAAR6Q96RI8 345 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 MAPKAP1Q9BPZ7 522 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 MS4A8Q9BY19 250 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 HES7Q9BYE0 225 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 DEFB126Q9BYW3 111 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 DAPP1Q9UN19 280 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 OSGIN2Q9Y236 505 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 MMACHCQ9Y4U1 282 aa16.53■□□□□ 0.24
COL6A1-204ENST00000486023 TRBV11-1A0A0K0K1C0 115 aa16.52■□□□□ 0.24
COL6A1-204ENST00000486023 A1L4Q6 167 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms