RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 FBXO8Q9NRD0 319 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 FGF21Q9NSA1 209 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 GID8Q9NWU2 228 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 FAM120CQ9NX05 1096 aaKnown RBP9.65□□□□□ -0.86
USP39-215ENST00000481409 GIMAP2Q9UG22 337 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 KLHL3Q9UH77 587 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 LEF1Q9UJU2 399 aaPredicted RBP9.65□□□□□ -0.86
USP39-215ENST00000481409 RARRES3Q9UL19 164 aa9.65□□□□□ -0.86
USP39-215ENST00000481409 ATXN7L1Q9ULK2 861 aaPredicted RBP9.65□□□□□ -0.86
USP39-215ENST00000481409 B4E171 279 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 TMEM150CB9EJG8 249 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 SAP18O00422 153 aaKnown RBP9.64□□□□□ -0.87
USP39-215ENST00000481409 P2RX6O15547 441 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 EEDO75530 441 aaKnown RBP9.64□□□□□ -0.87
USP39-215ENST00000481409 DKK1O94907 266 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 EIF2S1P05198 315 aaKnown RBP9.64□□□□□ -0.87
USP39-215ENST00000481409 PGRP06401 933 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 PIM1P11309 404 aaPredicted RBP9.64□□□□□ -0.87
USP39-215ENST00000481409 FGF5P12034 268 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 SDHBP21912 280 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 PTPN4P29074 926 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 PPP2R1BP30154 601 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 S100A3P33764 101 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 TSPAN7P41732 249 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 KIR3DL1P43629 444 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 GCGRP47871 477 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 SEPHS1P49903 392 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 TAS2R50P59544 299 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 UFM1P61960 85 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 BTN3A2P78410 334 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 FOXM1Q08050 763 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 C2orf80Q0P641 193 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 PTGR1Q14914 329 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 TRIP6Q15654 476 aaKnown RBP9.64□□□□□ -0.87
USP39-215ENST00000481409 HKDC1Q2TB90 917 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 SPATS1Q496A3 300 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 DNAL1Q4LDG9 190 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 CPTPQ5TA50 214 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 CDCP2Q5VXM1 449 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 C16orf89Q6UX73 402 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 ZNF771Q7L3S4 317 aaPredicted RBP9.64□□□□□ -0.87
USP39-215ENST00000481409 TREML1Q86YW5 311 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 DPP10Q8N608 796 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 TM4SF18Q96CE8 201 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 LIN37Q96GY3 246 aaPredicted RBP9.64□□□□□ -0.87
USP39-215ENST00000481409 MARK4Q96L34 752 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 TSSK3Q96PN8 268 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 TEFMQ96QE5 360 aaKnown RBP9.64□□□□□ -0.87
USP39-215ENST00000481409 HOPXQ9BPY8 73 aaPredicted RBP9.64□□□□□ -0.87
USP39-215ENST00000481409 NDC1Q9BTX1 674 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 EBPLQ9BY08 206 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 B3GNT4Q9C0J1 378 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 AICDAQ9GZX7 198 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 KLHL31Q9H511 634 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 SLC52A3Q9NQ40 469 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 MIEF1Q9NQG6 463 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 RXFP3Q9NSD7 469 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 ARL8BQ9NVJ2 186 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 FAM86C1Q9NVL1 165 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.64□□□□□ -0.87
USP39-215ENST00000481409 WDR70Q9NW82 654 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 SIDT1Q9NXL6 827 aaKnown RBP9.64□□□□□ -0.87
USP39-215ENST00000481409 TMEM9Q9P0T7 183 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 DAPP1Q9UN19 280 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 G3BP2Q9UN86 482 aaKnown RBP9.64□□□□□ -0.87
USP39-215ENST00000481409 AP3M1Q9Y2T2 418 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 ASB4Q9Y574 426 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 PCDHB3Q9Y5E6 796 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 ASXL3Q9C0F0 2248 aa9.64□□□□□ -0.87
USP39-215ENST00000481409 C15orf38-AP3S2A0A0A6YYH1 394 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 A8MU76 341 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 NR5A2O00482 541 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 RNASET2O00584 256 aaKnown RBP9.63□□□□□ -0.87
USP39-215ENST00000481409 DSCR3O14972 297 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 PROM1O43490 865 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 PRAMEF10O60809 474 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 KLHL18O94889 574 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 ONECUT2O95948 504 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 IFI6P09912 130 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 FURINP09958 794 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 T-ENOLP0DO92 83 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 CEACAM1P13688 526 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 COX7A2P14406 83 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 FOLR1P15328 257 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 TACR1P25103 407 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 ZFP36L2P47974 494 aaKnown RBP9.63□□□□□ -0.87
USP39-215ENST00000481409 TRPC1P48995 793 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 RAB38P57729 211 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 RAB15P59190 212 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 RAB8AP61006 207 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 MC2RQ01718 297 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 ART3Q13508 389 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 MLC1Q15049 377 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 MAPKAPK3Q16644 382 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 FAM174BQ3ZCQ3 159 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.63□□□□□ -0.87
USP39-215ENST00000481409 DEFB134Q4QY38 66 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 SNAP47Q5SQN1 464 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 PHF19Q5T6S3 580 aa9.63□□□□□ -0.87
USP39-215ENST00000481409 RHBDD2Q6NTF9 364 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms