RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	LRIT2	A6NDA9	550 aa		10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	FAM227A	F5H4B4	570 aa		10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	SAP18	O00422	153 aa	Known RBP	10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	ALDOA	P04075	364 aa	Known RBP	10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	SNRPA	P09012	282 aa	Known RBP	10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	KCNC1	P48547	511 aa		10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	CCNG1	P51959	295 aa		10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	RAB38	P57729	211 aa		10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	BTG2	P78543	158 aa		10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	STX4	Q12846	297 aa		10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	HYAL2	Q12891	473 aa		10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	MRPL49	Q13405	166 aa	Known RBP	10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	SETDB1	Q15047	1291 aa		10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	UBAP2	Q5T6F2	1119 aa	Known RBP	10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	TRMT10C	Q7L0Y3	403 aa	Known RBP	10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	CLNK	Q7Z7G1	428 aa		10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	PTGR2	Q8N8N7	351 aa	Predicted RBP	10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	CATSPER1	Q8NEC5	780 aa		10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	M1AP	Q8TC57	530 aa		10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	UBTD2	Q8WUN7	234 aa		10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	UBLCP1	Q8WVY7	318 aa	Predicted RBP	10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	C19orf60	Q96EN9	201 aa		10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	CMTM7	Q96FZ5	175 aa		10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	KCNC2	Q96PR1	638 aa		10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	F2RL3	Q96RI0	385 aa		10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	NPL	Q9BXD5	320 aa	Predicted RBP	10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	LANCL2	Q9NS86	450 aa		10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	ADGRE2	Q9UHX3	823 aa		10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	TMCO1	Q9UM00	188 aa		10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	PCDHGA10	Q9Y5H3	936 aa		10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	IQANK1	A0A1B0GTG1	560 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	OR5H15	A6NDH6	313 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	ANKUB1	A6NFN9	424 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	TCP11X1	B4DZS4	312 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	DNAJB6	O75190	326 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	WDPCP	O95876	746 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	TNNI3	P19429	210 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	TAC1	P20366	129 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	EEF1D	P29692	281 aa	Known RBP	10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	SERPINB1	P30740	379 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	TSFM	P43897	325 aa	Known RBP	10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	SLC26A5	P58743	744 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	TBCC	Q15814	346 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	CPSF6	Q16630	551 aa	Known RBP eCLIP	10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	EIF2S3L	Q2VIR3	472 aa	Known RBP	10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	TECRL	Q5HYJ1	363 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	ADNP2	Q6IQ32	1131 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	GRHL2	Q6ISB3	625 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	IGFL2	Q6UWQ7	119 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	GOLGA7	Q7Z5G4	137 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	SHISA5	Q8N114	240 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	HORMAD2	Q8N7B1	307 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	BCORP1	Q8N888	145 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	GRHL3	Q8TE85	626 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	IMMP1L	Q96LU5	166 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	C5orf34	Q96MH7	638 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	MTERF1	Q99551	399 aa	Known RBP	10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	UTP23	Q9BRU9	249 aa	Known RBP	10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	DEFB126	Q9BYW3	111 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	CDCP1	Q9H5V8	836 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	IPPK	Q9H8X2	491 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	ZNF358	Q9NW07	568 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	ANKRD10	Q9NXR5	420 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	XPR1	Q9UBH6	696 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	FBXW2	Q9UKT8	454 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	MMACHC	Q9Y4U1	282 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	ASB1	Q9Y576	335 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	PCDHGA11	Q9Y5H2	935 aa		10.82	□□□□□ -0.68
CPNE1-222	ENST00000473373	USP9Y	O00507	2555 aa	Predicted RBP	10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	EML6	Q6ZMW3	1958 aa		10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	TRBV11-1	A0A0K0K1C0	115 aa		10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373		A0A1W2PQ72	361 aa		10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	SAGE2P	A6NJ88	616 aa		10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	C4orf51	C9J302	202 aa		10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	RTCA	O00442	366 aa	Known RBP	10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	FCHO1	O14526	889 aa		10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	MYO1D	O94832	1006 aa		10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	RASAL1	O95294	804 aa		10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	SIX3	O95343	332 aa	Predicted RBP	10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	COL6A2	P12110	1019 aa		10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	CD22	P20273	847 aa		10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	CPN2	P22792	545 aa		10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	TLX1	P31314	330 aa	Predicted RBP	10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	SOX11	P35716	441 aa		10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	ST13	P50502	369 aa	Known RBP	10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	EFNA3	P52797	238 aa		10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	RUNX2	Q13950	521 aa		10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	NAA30	Q147X3	362 aa	Predicted RBP	10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	TMEM35A	Q53FP2	167 aa		10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	ACER2	Q5QJU3	275 aa		10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	LIPJ	Q5W064	366 aa		10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	ABHD17C	Q6PCB6	329 aa		10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	CYP20A1	Q6UW02	462 aa		10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	CRLF3	Q8IUI8	442 aa		10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	ZNF595	Q8IYB9	648 aa		10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	GSPT2	Q8IYD1	628 aa	Known RBP	10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	BEST3	Q8N1M1	668 aa		10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	PLD6	Q8N2A8	252 aa	Known RBP	10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	FAM98A	Q8NCA5	519 aa	Known RBP	10.81	□□□□□ -0.68
CPNE1-222	ENST00000473373	OR7G3	Q8NG95	312 aa		10.81	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms