RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	PRAMEF9	Q5VWM5	478 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	TMEM211	Q6ICI0	200 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	TRMT10B	Q6PF06	316 aa	Known RBP	10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	THOC6	Q86W42	341 aa	Known RBP	10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	PALM2	Q8IXS6	379 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	PPIL6	Q8IXY8	311 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	PSD4	Q8NDX1	1056 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	TRPV3	Q8NET8	790 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	OR2M7	Q8NG81	312 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	ATL1	Q8WXF7	558 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	MS4A6E	Q96DS6	147 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	TRIM44	Q96DX7	344 aa	Predicted RBP	10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	CERS2	Q96G23	380 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	VMP1	Q96GC9	406 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	HIST1H2AH	Q96KK5	128 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	HIST1H2AJ	Q99878	128 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	H2AFJ	Q9BTM1	129 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	RHBG	Q9H310	441 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	LIN28A	Q9H9Z2	209 aa	Known RBP	10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	PNPLA3	Q9NST1	481 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	KCMF1	Q9P0J7	381 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	KCNN3	Q9UGI6	736 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815	PPP2R2C	Q9Y2T4	447 aa		10.37	□□□□□ -0.75
PTPN7-204	ENST00000462815		A0A1B0GVC2	190 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	USP27X	A6NNY8	438 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	FOXO6	A8MYZ6	492 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	CDC7	O00311	574 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	CYR61	O00622	381 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	KLK8	O60259	260 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	OR2J2	O76002	312 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	PDE9A	O76083	593 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	OR6B1	O95007	311 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	NADK	O95544	446 aa	Predicted RBP	10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	TTC4	O95801	387 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	TUBB4A	P04350	444 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	CD1E	P15812	388 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	ZNF37A	P17032	561 aa	Predicted RBP	10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	HOXB4	P17483	251 aa	Predicted RBP	10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	IVD	P26440	423 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	SSR4	P51571	173 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	HSD17B7	P56937	341 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	CDKL1	Q00532	357 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	PMPCA	Q10713	525 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	FOXO1	Q12778	655 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	SPANXN3	Q5MJ09	141 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	ADGRD1	Q6QNK2	874 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	SLCO4C1	Q6ZQN7	724 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	TMPRSS11B	Q86T26	416 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	LIX1L	Q8IVB5	337 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	GPALPP1	Q8IXQ4	340 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	TMEM156	Q8N614	296 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	ZNF321P	Q8N8H1	164 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	RND1	Q92730	232 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	GAL3ST3	Q96A11	431 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	RASL10B	Q96S79	203 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	CSF3R	Q99062	836 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	MCMBP	Q9BTE3	642 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	NPL	Q9BXD5	320 aa	Predicted RBP	10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	TTTY12	Q9BZ98	90 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	DEFB127	Q9H1M4	99 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	FBXW2	Q9UKT8	454 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	CORO1C	Q9ULV4	474 aa	Predicted RBP	10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	SLC22A14	Q9Y267	594 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	YARS2	Q9Y2Z4	477 aa	Known RBP	10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	VWA7	Q9Y334	891 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	L3MBTL1	Q9Y468	752 aa		10.36	□□□□□ -0.75
PTPN7-204	ENST00000462815	ZNF407	Q9C0G0	2248 aa		10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815		A0A0G2JN53	185 aa		10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	FAM221A	A4D161	298 aa		10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	LRIT2	A6NDA9	550 aa		10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	URAD	A6NGE7	173 aa		10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	FAM166B	A8MTA8	275 aa		10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	PSMD12	O00232	456 aa	Predicted RBP	10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	DNALI1	O14645	258 aa	Predicted RBP	10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	WISP3	O95389	354 aa	Predicted RBP	10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	GLI4	P10075	376 aa		10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	ENDOU	P21128	410 aa	Known RBP	10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	ADH7	P40394	386 aa		10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	SOX3	P41225	446 aa		10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	FNTA	P49354	379 aa		10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	HK2	P52789	917 aa		10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	ART1	P52961	327 aa		10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	IST1	P53990	364 aa		10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	RAB38	P57729	211 aa		10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	BTN3A2	P78410	334 aa		10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	PDAP1	Q13442	181 aa	Known RBP	10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	HYAL4	Q2M3T9	481 aa		10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	C18orf21	Q32NC0	220 aa	Predicted RBP	10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	BBS9	Q3SYG4	887 aa		10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	GXYLT1	Q4G148	440 aa		10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	STEAP4	Q687X5	459 aa		10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	ADNP2	Q6IQ32	1131 aa		10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	FAM45BP	Q6NSW5	357 aa		10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	C17orf53	Q8N3J3	647 aa	Predicted RBP	10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	TBC1D19	Q8N5T2	526 aa		10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	FAM45A	Q8TCE6	357 aa		10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	PTPMT1	Q8WUK0	201 aa	Predicted RBP	10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	ANKRD49	Q8WVL7	239 aa		10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	ANKRD7	Q92527	254 aa		10.35	□□□□□ -0.75
PTPN7-204	ENST00000462815	PWWP2A	Q96N64	755 aa		10.35	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms