RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 TMCO1Q9UM00 188 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 RNF11Q9Y3C5 154 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 PCDHGA10Q9Y5H3 936 aa11.96□□□□□ -0.49
PRPF40A-203ENST00000448428 TCRBV16S1A1N1A0A5B0 115 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 STX16-NPEPL1H3BU86 382 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 SAP18O00422 153 aaKnown RBP11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 RTCAO00442 366 aaKnown RBP11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 CYR61O00622 381 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 STX16O14662 325 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 SMIM24O75264 130 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 VPS4BO75351 444 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 WDPCPO95876 746 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 F10P00742 488 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 ATP5A1P25705 553 aaKnown RBP11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 EEF1DP29692 281 aaKnown RBP11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 SERPINB1P30740 379 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 PIK3CGP48736 1102 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 HNRNPFP52597 415 aaKnown RBP11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 LIM2P55344 173 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 SLC26A5P58743 744 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 ARG2P78540 354 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 DDX39BQ13838 428 aaKnown RBP11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 ZNF169Q14929 603 aaPredicted RBP11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 TLR1Q15399 786 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 TMEM35AQ53FP2 167 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 DEPDC1Q5TB30 811 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 ABHD17BQ5VST6 288 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 FCRLBQ6BAA4 426 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 ZNF793Q6ZN11 406 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 CHSY3Q70JA7 882 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 MYLK4Q86YV6 388 aaPredicted RBP11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 L3MBTL4Q8NA19 623 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 GALNT11Q8NCW6 608 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 SRFBP1Q8NEF9 429 aaKnown RBP11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 OR1N1Q8NGS0 311 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 MTBPQ96DY7 904 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 CMTM7Q96FZ5 175 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 KCNC2Q96PR1 638 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 MTERF1Q99551 399 aaKnown RBP11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 TBCDQ9BTW9 1192 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 OR51B5Q9H339 312 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 NOL11Q9H8H0 719 aaKnown RBP11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 COPS7BQ9H9Q2 264 aaPredicted RBP11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 PRM3Q9NNZ6 103 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 MMP25Q9NPA2 562 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 PRTFDC1Q9NRG1 225 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 KCMF1Q9P0J7 381 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 MAP10Q9P2G4 905 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 FETUBQ9UGM5 382 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 ADGRE2Q9UHX3 823 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 DAPP1Q9UN19 280 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 VPS4AQ9UN37 437 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 NTNG1Q9Y2I2 539 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 TSC22D4Q9Y3Q8 395 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 PCDHGA11Q9Y5H2 935 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 CLDN16Q9Y5I7 305 aa11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 COPG1Q9Y678 874 aaKnown RBP11.95□□□□□ -0.5
PRPF40A-203ENST00000448428 IQANK1A0A1B0GTG1 560 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 DYTNA2CJ06 578 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 A8MUA0 341 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 TCP11X1B4DZS4 312 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 H0YIV9 168 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 TGFBR3LH3BV60 316 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 CLDN4O14493 209 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 OR7A17O14581 309 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 UGDHO60701 494 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 CLDN9O95484 217 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 UQCRHP07919 91 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 GNLYP22749 145 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 PIK3CBP42338 1070 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 UQCRFS1P47985 274 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 TNFSF10P50591 281 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 NEK2P51955 445 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 HSD17B7P56937 341 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 ZNF33BQ06732 778 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 CPSF6Q16630 551 aaKnown RBP eCLIP11.94□□□□□ -0.51e-15■■■■□ 19.8
PRPF40A-203ENST00000448428 AP5B1Q2VPB7 878 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 KHDRBS2Q5VWX1 349 aaKnown RBP11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 SCUBE1Q8IWY4 988 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 ACOT4Q8N9L9 421 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 FAM47BQ8NA70 645 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 ARMC2Q8NEN0 867 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 NFAM1Q8NET5 270 aaPredicted RBP11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 OR52B6Q8NGF0 335 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 ZNF354BQ96LW1 612 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 NSUN5Q96P11 429 aaKnown RBP11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 CDK15Q96Q40 435 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 BARD1Q99728 777 aaKnown RBP11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 NPAS2Q99743 824 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 MAPKAP1Q9BPZ7 522 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 SORBS1Q9BX66 1292 aaKnown RBP11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 ROGDIQ9GZN7 287 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 MRPL46Q9H2W6 279 aaKnown RBP11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 ZBTB26Q9HCK0 441 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 DMRT3Q9NQL9 472 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 TMEM216Q9P0N5 145 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 TBK1Q9UHD2 729 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 TEKT2Q9UIF3 430 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 PCTPQ9UKL6 214 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 MMACHCQ9Y4U1 282 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms