RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 PRDM7Q9NQW5 492 aa19.41■□□□□ 0.7
SDC1-205ENST00000447124 ZDHHC18Q9NUE0 388 aa19.41■□□□□ 0.7
SDC1-205ENST00000447124 SEC14L3Q9UDX4 400 aa19.41■□□□□ 0.7
SDC1-205ENST00000447124 RNF112Q9ULX5 631 aa19.41■□□□□ 0.7
SDC1-205ENST00000447124 MMACHCQ9Y4U1 282 aa19.41■□□□□ 0.7
SDC1-205ENST00000447124 A0A1B0GUH1 482 aa19.4■□□□□ 0.7
SDC1-205ENST00000447124 SP1P08047 785 aa19.4■□□□□ 0.7
SDC1-205ENST00000447124 GSTM2P28161 218 aa19.4■□□□□ 0.7
SDC1-205ENST00000447124 TPP2P29144 1249 aaPredicted RBP19.4■□□□□ 0.7
SDC1-205ENST00000447124 DCTP40126 519 aa19.4■□□□□ 0.7
SDC1-205ENST00000447124 CASP2P42575 452 aa19.4■□□□□ 0.7
SDC1-205ENST00000447124 GPR143P51810 404 aa19.4■□□□□ 0.7
SDC1-205ENST00000447124 RAB38P57729 211 aa19.4■□□□□ 0.7
SDC1-205ENST00000447124 OC90Q02509 493 aaPredicted RBP19.4■□□□□ 0.7
SDC1-205ENST00000447124 CHIT1Q13231 466 aa19.4■□□□□ 0.7
SDC1-205ENST00000447124 E2F2Q14209 437 aa19.4■□□□□ 0.7
SDC1-205ENST00000447124 UBAP2Q5T6F2 1119 aaKnown RBP19.4■□□□□ 0.7
SDC1-205ENST00000447124 SLC25A25Q6KCM7 469 aa19.4■□□□□ 0.7
SDC1-205ENST00000447124 APCDD1LQ8NCL9 501 aa19.4■□□□□ 0.7
SDC1-205ENST00000447124 OR2L5Q8NG80 312 aa19.4■□□□□ 0.7
SDC1-205ENST00000447124 PRTFDC1Q9NRG1 225 aa19.4■□□□□ 0.7
SDC1-205ENST00000447124 LRFN1Q9P244 771 aa19.4■□□□□ 0.7
SDC1-205ENST00000447124 CELSR2Q9HCU4 2923 aa19.4■□□□□ 0.7
SDC1-205ENST00000447124 PCNX1Q96RV3 2341 aa19.4■□□□□ 0.7
SDC1-205ENST00000447124 ASPDHA6ND91 283 aa19.39■□□□□ 0.69
SDC1-205ENST00000447124 UBXN8O00124 270 aa19.39■□□□□ 0.69
SDC1-205ENST00000447124 CYR61O00622 381 aa19.39■□□□□ 0.69
SDC1-205ENST00000447124 MTHFD2P13995 350 aa19.39■□□□□ 0.69
SDC1-205ENST00000447124 CD46P15529 392 aa19.39■□□□□ 0.69
SDC1-205ENST00000447124 CRABP2P29373 138 aa19.39■□□□□ 0.69
SDC1-205ENST00000447124 STX2P32856 288 aa19.39■□□□□ 0.69
SDC1-205ENST00000447124 IRF8Q02556 426 aa19.39■□□□□ 0.69
SDC1-205ENST00000447124 SLMAPQ14BN4 828 aa19.39■□□□□ 0.69
SDC1-205ENST00000447124 TBCCQ15814 346 aa19.39■□□□□ 0.69
SDC1-205ENST00000447124 RAPH1Q70E73 1250 aa19.39■□□□□ 0.69
SDC1-205ENST00000447124 GALNTL5Q7Z4T8 443 aa19.39■□□□□ 0.69
SDC1-205ENST00000447124 ARMC2Q8NEN0 867 aa19.39■□□□□ 0.69
SDC1-205ENST00000447124 CSF3RQ99062 836 aa19.39■□□□□ 0.69
SDC1-205ENST00000447124 EFCAB11Q9BUY7 163 aa19.39■□□□□ 0.69
SDC1-205ENST00000447124 TRIM45Q9H8W5 580 aaPredicted RBP19.39■□□□□ 0.69
SDC1-205ENST00000447124 NMRAL1Q9HBL8 299 aa19.39■□□□□ 0.69
SDC1-205ENST00000447124 PNO1Q9NRX1 252 aaKnown RBP19.39■□□□□ 0.69
SDC1-205ENST00000447124 KCMF1Q9P0J7 381 aa19.39■□□□□ 0.69
SDC1-205ENST00000447124 ZNF223Q9UK11 482 aaPredicted RBP19.39■□□□□ 0.69
SDC1-205ENST00000447124 CRYBG3Q68DQ2 2970 aa19.39■□□□□ 0.69
SDC1-205ENST00000447124 B3GALT2O43825 422 aa19.38■□□□□ 0.69
SDC1-205ENST00000447124 LTA4HP09960 611 aaKnown RBP19.38■□□□□ 0.69
SDC1-205ENST00000447124 CERS1P27544 350 aa19.38■□□□□ 0.69
SDC1-205ENST00000447124 LIM2P55344 173 aa19.38■□□□□ 0.69
SDC1-205ENST00000447124 PER3P56645 1201 aa19.38■□□□□ 0.69
SDC1-205ENST00000447124 HSD17B7P56937 341 aa19.38■□□□□ 0.69
SDC1-205ENST00000447124 PNPLA5Q7Z6Z6 429 aaPredicted RBP19.38■□□□□ 0.69
SDC1-205ENST00000447124 CENPLQ8N0S6 344 aaPredicted RBP19.38■□□□□ 0.69
SDC1-205ENST00000447124 ARMC10Q8N2F6 343 aa19.38■□□□□ 0.69
SDC1-205ENST00000447124 FAM47BQ8NA70 645 aa19.38■□□□□ 0.69
SDC1-205ENST00000447124 ZNF473Q8WTR7 871 aaKnown RBP19.38■□□□□ 0.69
SDC1-205ENST00000447124 KCTD4Q8WVF5 259 aa19.38■□□□□ 0.69
SDC1-205ENST00000447124 MRRFQ96E11 262 aaKnown RBP19.38■□□□□ 0.69
SDC1-205ENST00000447124 SERINC2Q96SA4 455 aa19.38■□□□□ 0.69
SDC1-205ENST00000447124 DEFB126Q9BYW3 111 aa19.38■□□□□ 0.69
SDC1-205ENST00000447124 NUDT4Q9NZJ9 180 aa19.38■□□□□ 0.69
SDC1-205ENST00000447124 DAPP1Q9UN19 280 aa19.38■□□□□ 0.69
SDC1-205ENST00000447124 PPIEQ9UNP9 301 aaKnown RBP19.38■□□□□ 0.69
SDC1-205ENST00000447124 TRGV8A0A0C4DH27 118 aa19.37■□□□□ 0.69
SDC1-205ENST00000447124 MYOCOSA0A1B0GUC4 107 aa19.37■□□□□ 0.69
SDC1-205ENST00000447124 KERAO60938 352 aa19.37■□□□□ 0.69
SDC1-205ENST00000447124 MYO1DO94832 1006 aa19.37■□□□□ 0.69
SDC1-205ENST00000447124 S100BP04271 92 aaPredicted RBP19.37■□□□□ 0.69
SDC1-205ENST00000447124 C2P06681 752 aa19.37■□□□□ 0.69
SDC1-205ENST00000447124 EEF1DP29692 281 aaKnown RBP19.37■□□□□ 0.69
SDC1-205ENST00000447124 TRHRP34981 398 aaPredicted RBP19.37■□□□□ 0.69
SDC1-205ENST00000447124 MTTPP55157 894 aa19.37■□□□□ 0.69
SDC1-205ENST00000447124 IRF9Q00978 393 aa19.37■□□□□ 0.69
SDC1-205ENST00000447124 PCDH1Q08174 1060 aa19.37■□□□□ 0.69
SDC1-205ENST00000447124 NAB1Q13506 487 aa19.37■□□□□ 0.69
SDC1-205ENST00000447124 LAPTM5Q13571 262 aa19.37■□□□□ 0.69
SDC1-205ENST00000447124 BMPR2Q13873 1038 aa19.37■□□□□ 0.69
SDC1-205ENST00000447124 MROH9Q5TGP6 573 aa19.37■□□□□ 0.69
SDC1-205ENST00000447124 TRIM40Q6P9F5 258 aa19.37■□□□□ 0.69
SDC1-205ENST00000447124 ZNF793Q6ZN11 406 aa19.37■□□□□ 0.69
SDC1-205ENST00000447124 LRRC70Q7Z2Q7 622 aa19.37■□□□□ 0.69
SDC1-205ENST00000447124 CLNKQ7Z7G1 428 aa19.37■□□□□ 0.69
SDC1-205ENST00000447124 B3GNT7Q8NFL0 401 aa19.37■□□□□ 0.69
SDC1-205ENST00000447124 TSPAN10Q9H1Z9 355 aaPredicted RBP19.37■□□□□ 0.69
SDC1-205ENST00000447124 ACOT9Q9Y305 439 aa19.37■□□□□ 0.69
SDC1-205ENST00000447124 SUPT3HB4E1H0 165 aa19.36■□□□□ 0.69
SDC1-205ENST00000447124 RTCAO00442 366 aaKnown RBP19.36■□□□□ 0.69
SDC1-205ENST00000447124 CDK2AP1O14519 115 aa19.36■□□□□ 0.69
SDC1-205ENST00000447124 PRKNO60260 465 aaPredicted RBP19.36■□□□□ 0.69
SDC1-205ENST00000447124 SH3BGRLO75368 114 aa19.36■□□□□ 0.69
SDC1-205ENST00000447124 SUPT3HO75486 399 aa19.36■□□□□ 0.69
SDC1-205ENST00000447124 MSH2P43246 934 aa19.36■□□□□ 0.69
SDC1-205ENST00000447124 CLCN2P51788 898 aa19.36■□□□□ 0.69
SDC1-205ENST00000447124 ALDH6A1Q02252 535 aaKnown RBP19.36■□□□□ 0.69
SDC1-205ENST00000447124 SLC13A2Q13183 592 aa19.36■□□□□ 0.69
SDC1-205ENST00000447124 MAPKAPK3Q16644 382 aa19.36■□□□□ 0.69
SDC1-205ENST00000447124 HIST2H2ACQ16777 129 aaPredicted RBP19.36■□□□□ 0.69
SDC1-205ENST00000447124 RNFT1Q5M7Z0 435 aa19.36■□□□□ 0.69
SDC1-205ENST00000447124 HIST2H2AA3Q6FI13 130 aa19.36■□□□□ 0.69
SDC1-205ENST00000447124 TBC1D1Q86TI0 1168 aaPredicted RBP19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms