RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 CLDN4O14493 209 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 PDE9AO76083 593 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 IFNA16P05015 189 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 SMIM10L1P0DMW3 83 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 GNAZP19086 355 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 IVDP26440 423 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 CERS1P27544 350 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 SSTR2P30874 369 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 TRHRP34981 398 aaPredicted RBP13.53□□□□□ -0.24
SDC1-204ENST00000429035 KIR3DL1P43629 444 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 HNMTP50135 292 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 SSR4P51571 173 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 HNRNPFP52597 415 aaKnown RBP13.53□□□□□ -0.24
SDC1-204ENST00000429035 CDKL1Q00532 357 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 RUNX2Q13950 521 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 TRIM40Q6P9F5 258 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 TMIGD1Q6UXZ0 262 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 MEX3BQ6ZN04 569 aaKnown RBP13.53□□□□□ -0.24
SDC1-204ENST00000429035 C16orf47Q6ZP98 133 aaPredicted RBP13.53□□□□□ -0.24
SDC1-204ENST00000429035 CEP128Q6ZU80 1094 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 SYDE1Q6ZW31 735 aaPredicted RBP13.53□□□□□ -0.24
SDC1-204ENST00000429035 FGD2Q7Z6J4 655 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 TMEM52Q8NDY8 209 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 TTLQ8NG68 377 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 PHF10Q8WUB8 498 aaKnown RBP13.53□□□□□ -0.24
SDC1-204ENST00000429035 ANKRD49Q8WVL7 239 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 ASB15Q8WXK1 588 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 LRRC39Q96DD0 335 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 PDLIM5Q96HC4 596 aaKnown RBP13.53□□□□□ -0.24
SDC1-204ENST00000429035 SMIM10Q96HG1 83 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 CSF3RQ99062 836 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 VKORC1Q9BQB6 163 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 TIMMDC1Q9NPL8 285 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 HPF1Q9NWY4 346 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 KCMF1Q9P0J7 381 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 ASB1Q9Y576 335 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 ANKDD1BA6NHY2 528 aa13.52□□□□□ -0.25
SDC1-204ENST00000429035 FAM166BA8MTA8 275 aa13.52□□□□□ -0.25
SDC1-204ENST00000429035 TGFBR3LH3BV60 316 aa13.52□□□□□ -0.25
SDC1-204ENST00000429035 CDK2AP1O14519 115 aa13.52□□□□□ -0.25
SDC1-204ENST00000429035 PRKNO60260 465 aaPredicted RBP13.52□□□□□ -0.25
SDC1-204ENST00000429035 PIAS1O75925 651 aa13.52□□□□□ -0.25
SDC1-204ENST00000429035 SEC31AO94979 1220 aaKnown RBP13.52□□□□□ -0.25
SDC1-204ENST00000429035 TFEBP19484 476 aa13.52□□□□□ -0.25
SDC1-204ENST00000429035 BMPR2Q13873 1038 aa13.52□□□□□ -0.25
SDC1-204ENST00000429035 SLCO4C1Q6ZQN7 724 aa13.52□□□□□ -0.25
SDC1-204ENST00000429035 MDGA2Q7Z553 956 aa13.52□□□□□ -0.25
SDC1-204ENST00000429035 CHERPQ8IWX8 916 aaKnown RBP13.52□□□□□ -0.25
SDC1-204ENST00000429035 SCUBE1Q8IWY4 988 aa13.52□□□□□ -0.25
SDC1-204ENST00000429035 ZNF295-AS1Q8N0V1 137 aa13.52□□□□□ -0.25
SDC1-204ENST00000429035 SPATA6LQ8N4H0 392 aa13.52□□□□□ -0.25
SDC1-204ENST00000429035 FAM57AQ8TBR7 257 aa13.52□□□□□ -0.25
SDC1-204ENST00000429035 RHBDF1Q96CC6 855 aa13.52□□□□□ -0.25
SDC1-204ENST00000429035 MS4A6EQ96DS6 147 aa13.52□□□□□ -0.25
SDC1-204ENST00000429035 RUNDC3BQ96NL0 473 aa13.52□□□□□ -0.25
SDC1-204ENST00000429035 DMRTA2Q96SC8 542 aa13.52□□□□□ -0.25
SDC1-204ENST00000429035 REXO4Q9GZR2 422 aaKnown RBP13.52□□□□□ -0.25
SDC1-204ENST00000429035 RHOJQ9H4E5 214 aa13.52□□□□□ -0.25
SDC1-204ENST00000429035 TRIM45Q9H8W5 580 aaPredicted RBP13.52□□□□□ -0.25
SDC1-204ENST00000429035 CAB39LQ9H9S4 337 aa13.52□□□□□ -0.25
SDC1-204ENST00000429035 ADAP2Q9NPF8 381 aa13.52□□□□□ -0.25
SDC1-204ENST00000429035 ZNF223Q9UK11 482 aaPredicted RBP13.52□□□□□ -0.25
SDC1-204ENST00000429035 PHF3Q92576 2039 aaKnown RBP13.52□□□□□ -0.25
SDC1-204ENST00000429035 HCFC1P51610 2035 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 USP27XA6NNY8 438 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 EFCAB8A8MWE9 144 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 G3V3Y1 287 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 ACOT7O00154 380 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 WWP2O00308 870 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 PHGDHO43175 533 aaKnown RBP13.51□□□□□ -0.25
SDC1-204ENST00000429035 OR2J2O76002 312 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 ZFAND5O76080 213 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 TUBB4AP04350 444 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 SLC6A12P48065 614 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 HSPA7P48741 367 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 KRTAP10-9P60411 292 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 TLE4Q04727 773 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 TERF2Q15554 542 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 TGFBIQ15582 683 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 CMPK2Q5EBM0 449 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 XKR6Q5GH73 641 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 ADNP2Q6IQ32 1131 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 IL20RBQ6UXL0 311 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 ZBED8Q8IZ13 594 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 OR52N2Q8NGI0 321 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 ESAMQ96AP7 390 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 TMEM79Q9BSE2 394 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 NPLQ9BXD5 320 aaPredicted RBP13.51□□□□□ -0.25
SDC1-204ENST00000429035 DEFB127Q9H1M4 99 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 DNAJC11Q9NVH1 559 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 NSMCE4AQ9NXX6 385 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 TXNDC16Q9P2K2 825 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 CCDC168Q8NDH2 2452 aa13.51□□□□□ -0.25
SDC1-204ENST00000429035 LRIT2A6NDA9 550 aa13.5□□□□□ -0.25
SDC1-204ENST00000429035 ADAM10O14672 748 aa13.5□□□□□ -0.25
SDC1-204ENST00000429035 SH3BGRLO75368 114 aa13.5□□□□□ -0.25
SDC1-204ENST00000429035 CLEC3AO75596 197 aa13.5□□□□□ -0.25
SDC1-204ENST00000429035 S100BP04271 92 aaPredicted RBP13.5□□□□□ -0.25
SDC1-204ENST00000429035 TNNI3P19429 210 aa13.5□□□□□ -0.25
SDC1-204ENST00000429035 HPDP32754 393 aaPredicted RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms