RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 IDSP22304 550 aa8□□□□□ -1.13
CD44-208ENST00000428726 MAPK1P28482 360 aa8□□□□□ -1.13
CD44-208ENST00000428726 DRD3P35462 400 aa8□□□□□ -1.13
CD44-208ENST00000428726 OPRD1P41143 372 aa8□□□□□ -1.13
CD44-208ENST00000428726 OPRL1P41146 370 aa8□□□□□ -1.13
CD44-208ENST00000428726 EIF2B2P49770 351 aaKnown RBP8□□□□□ -1.13
CD44-208ENST00000428726 SEPHS1P49903 392 aa8□□□□□ -1.13
CD44-208ENST00000428726 ALDH3A2P51648 485 aa8□□□□□ -1.13
CD44-208ENST00000428726 AP1S2P56377 157 aa8□□□□□ -1.13
CD44-208ENST00000428726 NUP107P57740 925 aa8□□□□□ -1.13
CD44-208ENST00000428726 TAS2R38P59533 333 aa8□□□□□ -1.13
CD44-208ENST00000428726 PPP2CBP62714 309 aa8□□□□□ -1.13
CD44-208ENST00000428726 PPP2CAP67775 309 aa8□□□□□ -1.13
CD44-208ENST00000428726 SPIBQ01892 262 aa8□□□□□ -1.13
CD44-208ENST00000428726 GSTM4Q03013 218 aa8□□□□□ -1.13
CD44-208ENST00000428726 DUOXA1Q1HG43 343 aa8□□□□□ -1.13
CD44-208ENST00000428726 VMACQ2NL98 169 aa8□□□□□ -1.13
CD44-208ENST00000428726 TPRG1LQ5T0D9 272 aa8□□□□□ -1.13
CD44-208ENST00000428726 ZC3H14Q6PJT7 736 aaKnown RBP8□□□□□ -1.13
CD44-208ENST00000428726 TMIGD1Q6UXZ0 262 aa8□□□□□ -1.13
CD44-208ENST00000428726 B3GLCTQ6Y288 498 aa8□□□□□ -1.13
CD44-208ENST00000428726 DCP2Q8IU60 420 aaKnown RBP8□□□□□ -1.13
CD44-208ENST00000428726 CCDC116Q8IYX3 515 aa8□□□□□ -1.13
CD44-208ENST00000428726 C8orf59Q8N0T1 100 aaPredicted RBP8□□□□□ -1.13
CD44-208ENST00000428726 L3MBTL4Q8NA19 623 aa8□□□□□ -1.13
CD44-208ENST00000428726 ZNF540Q8NDQ6 660 aa8□□□□□ -1.13
CD44-208ENST00000428726 ZNF555Q8NEP9 628 aa8□□□□□ -1.13
CD44-208ENST00000428726 OR52E4Q8NGH9 312 aa8□□□□□ -1.13
CD44-208ENST00000428726 SMARCD2Q92925 531 aa8□□□□□ -1.13
CD44-208ENST00000428726 POP5Q969H6 163 aaKnown RBP8□□□□□ -1.13
CD44-208ENST00000428726 PPCDCQ96CD2 204 aa8□□□□□ -1.13
CD44-208ENST00000428726 CMTM7Q96FZ5 175 aa8□□□□□ -1.13
CD44-208ENST00000428726 FEVQ99581 238 aa8□□□□□ -1.13
CD44-208ENST00000428726 NIPSNAP1Q9BPW8 284 aa8□□□□□ -1.13
CD44-208ENST00000428726 CCDC177Q9NQR7 707 aaPredicted RBP8□□□□□ -1.13
CD44-208ENST00000428726 INIPQ9NRY2 104 aa8□□□□□ -1.13
CD44-208ENST00000428726 STON1Q9Y6Q2 735 aa8□□□□□ -1.13
CD44-208ENST00000428726 LAMA5O15230 3695 aa8□□□□□ -1.13
CD44-208ENST00000428726 CACNA1EQ15878 2313 aa8□□□□□ -1.13
CD44-208ENST00000428726 SPTBN2O15020 2390 aa8□□□□□ -1.13
CD44-208ENST00000428726 LOC100506127A0A0U1RQW1 187 aa8□□□□□ -1.13
CD44-208ENST00000428726 A0A1W2PQU0 124 aa8□□□□□ -1.13
CD44-208ENST00000428726 SH3PXD2BA1X283 911 aa8□□□□□ -1.13
CD44-208ENST00000428726 PRAMEF25A6NGN4 478 aa8□□□□□ -1.13
CD44-208ENST00000428726 CLDN24A6NM45 220 aa8□□□□□ -1.13
CD44-208ENST00000428726 ISM1B1AKI9 464 aa8□□□□□ -1.13
CD44-208ENST00000428726 H0YAE9 185 aa8□□□□□ -1.13
CD44-208ENST00000428726 BCKDKO14874 412 aa8□□□□□ -1.13
CD44-208ENST00000428726 SCN2BO60939 215 aa8□□□□□ -1.13
CD44-208ENST00000428726 SCELO95171 688 aa8□□□□□ -1.13
CD44-208ENST00000428726 HTR1AP08908 422 aa8□□□□□ -1.13
CD44-208ENST00000428726 CCNA2P20248 432 aa8□□□□□ -1.13
CD44-208ENST00000428726 PRPH2P23942 346 aa8□□□□□ -1.13
CD44-208ENST00000428726 GPC1P35052 558 aa8□□□□□ -1.13
CD44-208ENST00000428726 MANFP55145 182 aaKnown RBP8□□□□□ -1.13
CD44-208ENST00000428726 RPS3AP61247 264 aaKnown RBP8□□□□□ -1.13
CD44-208ENST00000428726 NFATC3Q12968 1075 aa8□□□□□ -1.13
CD44-208ENST00000428726 RUNX3Q13761 415 aa8□□□□□ -1.13
CD44-208ENST00000428726 CLCA4Q14CN2 919 aa8□□□□□ -1.13
CD44-208ENST00000428726 GAB4Q2WGN9 574 aa8□□□□□ -1.13
CD44-208ENST00000428726 PAGE2BQ5JRK9 111 aa8□□□□□ -1.13
CD44-208ENST00000428726 ATG9BQ674R7 924 aa8□□□□□ -1.13
CD44-208ENST00000428726 LAIR2Q6ISS4 152 aa8□□□□□ -1.13
CD44-208ENST00000428726 NEK10Q6ZWH5 1172 aa8□□□□□ -1.13
CD44-208ENST00000428726 ZZZ3Q8IYH5 903 aa8□□□□□ -1.13
CD44-208ENST00000428726 CPA6Q8N4T0 437 aa8□□□□□ -1.13
CD44-208ENST00000428726 OR9A1PQ8NGU1 263 aa8□□□□□ -1.13
CD44-208ENST00000428726 KAT2AQ92830 837 aa8□□□□□ -1.13
CD44-208ENST00000428726 GLMNQ92990 594 aa8□□□□□ -1.13
CD44-208ENST00000428726 ITFG2Q969R8 447 aa8□□□□□ -1.13
CD44-208ENST00000428726 ZG16BQ96DA0 208 aa8□□□□□ -1.13
CD44-208ENST00000428726 KCNH6Q9H252 994 aa8□□□□□ -1.13
CD44-208ENST00000428726 RAD21L1Q9H4I0 556 aa8□□□□□ -1.13
CD44-208ENST00000428726 C11orf16Q9NQ32 467 aa8□□□□□ -1.13
CD44-208ENST00000428726 RAD18Q9NS91 495 aa8□□□□□ -1.13
CD44-208ENST00000428726 THUMPD1Q9NXG2 353 aaKnown RBP8□□□□□ -1.13
CD44-208ENST00000428726 DAPK2Q9UIK4 370 aa8□□□□□ -1.13
CD44-208ENST00000428726 NDRG2Q9UN36 371 aaKnown RBP8□□□□□ -1.13
CD44-208ENST00000428726 NTNG1Q9Y2I2 539 aa8□□□□□ -1.13
CD44-208ENST00000428726 TMED5Q9Y3A6 229 aa8□□□□□ -1.13
CD44-208ENST00000428726 GMPPBQ9Y5P6 360 aa8□□□□□ -1.13
CD44-208ENST00000428726 IRAK3Q9Y616 596 aa8□□□□□ -1.13
CD44-208ENST00000428726 SLCO1B1Q9Y6L6 691 aa8□□□□□ -1.13
CD44-208ENST00000428726 TRIM64A6NGJ6 449 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 A6NL46 340 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 TRIM64CA6NLI5 447 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 NPIPB8E9PQR5 432 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 GCM2O75603 506 aaPredicted RBP7.99□□□□□ -1.13
CD44-208ENST00000428726 CDC123O75794 336 aaPredicted RBP7.99□□□□□ -1.13
CD44-208ENST00000428726 AP2A2O94973 939 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 PRNPP04156 253 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 PRLHRP49683 370 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 PNLIPRP1P54315 467 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 NCS1P62166 190 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 ELAVL3Q14576 367 aaKnown RBP7.99□□□□□ -1.13
CD44-208ENST00000428726 DPY19L1Q2PZI1 675 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 PRAMEF13Q5VWM6 474 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 DPPA4Q7L190 304 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 DSG4Q86SJ6 1040 aa7.99□□□□□ -1.13
CD44-208ENST00000428726 SLC7A5P1Q8MH63 180 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms