RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 DOK4Q8TEW6 326 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 ASB5Q8WWX0 329 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 CSF3RQ99062 836 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 ZNF559Q9BR84 538 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 WDR83Q9BRX9 315 aaKnown RBP7.53□□□□□ -1.2
VIM-202ENST00000421459 CNPPD1Q9BV87 410 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 FAM129AQ9BZQ8 928 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 TP63Q9H3D4 680 aaPredicted RBP7.53□□□□□ -1.2
VIM-202ENST00000421459 GSX1Q9H4S2 264 aaPredicted RBP7.53□□□□□ -1.2
VIM-202ENST00000421459 SEMA4BQ9NPR2 832 aaPredicted RBP7.53□□□□□ -1.2
VIM-202ENST00000421459 PPANQ9NQ55 473 aaKnown RBP7.53□□□□□ -1.2
VIM-202ENST00000421459 HOMER3Q9NSC5 361 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 TRMT1Q9NXH9 659 aaKnown RBP7.53□□□□□ -1.2
VIM-202ENST00000421459 ERVK-11Q9UQG0 969 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 DYRK1BQ9Y463 629 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 HEATR5BQ9P2D3 2071 aa7.53□□□□□ -1.2
VIM-202ENST00000421459 SCN2AQ99250 2005 aa7.52□□□□□ -1.2
VIM-202ENST00000421459 A0A0G2JNJ9 132 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 A8MVJ9 347 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 ERI3O43414 337 aaKnown RBP7.52□□□□□ -1.21
VIM-202ENST00000421459 PRAMEF4O60810 478 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 HOXD4P09016 255 aaPredicted RBP7.52□□□□□ -1.21
VIM-202ENST00000421459 GLI4P10075 376 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 CD99P14209 185 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 HOXB4P17483 251 aaPredicted RBP7.52□□□□□ -1.21
VIM-202ENST00000421459 AHRP35869 848 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 ADH7P40394 386 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 MAGEA5P43359 124 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 DNASE1L1P49184 302 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 PLA2G16P53816 162 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 CCZ1BP86790 482 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 CCZ1P86791 482 aaPredicted RBP7.52□□□□□ -1.21
VIM-202ENST00000421459 ID2Q02363 134 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 SLC13A2Q13183 592 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 MYBPHQ13203 477 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 BBS9Q3SYG4 887 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 RNASEH2BQ5TBB1 312 aaKnown RBP7.52□□□□□ -1.21
VIM-202ENST00000421459 PRAMEF9Q5VWM5 478 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 ARMC3Q5W041 872 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 LRRC8EQ6NSJ5 796 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 ARHGAP11AQ6P4F7 1023 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 KIAA0408Q6ZU52 694 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 VN1R5Q7Z5H4 357 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 PPIL6Q8IXY8 311 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 RASGEF1CQ8N431 466 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 SPATA6LQ8N4H0 392 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 TMEM251Q8N6I4 163 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 TRPV3Q8NET8 790 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 PTPMT1Q8WUK0 201 aaPredicted RBP7.52□□□□□ -1.21
VIM-202ENST00000421459 ANKRD49Q8WVL7 239 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 CCT6BQ92526 530 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 SLCO2A1Q92959 643 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 MS4A6EQ96DS6 147 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 CFAP36Q96G28 342 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 VMP1Q96GC9 406 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 SCYL1Q96KG9 808 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 QRFPRQ96P65 431 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 RASL10BQ96S79 203 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 AIF1LQ9BQI0 150 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 TTYH2Q9BSA4 534 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 TMUB1Q9BVT8 246 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 TTTY12Q9BZ98 90 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 PELI2Q9HAT8 420 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 TIMMDC1Q9NPL8 285 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 PRTFDC1Q9NRG1 225 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 CCM2LQ9NUG4 571 aaPredicted RBP7.52□□□□□ -1.21
VIM-202ENST00000421459 HPF1Q9NWY4 346 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 ALKBH4Q9NXW9 302 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 Q9UFV3 132 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 YARS2Q9Y2Z4 477 aaKnown RBP7.52□□□□□ -1.21
VIM-202ENST00000421459 VWA7Q9Y334 891 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 FAM215AQ9Y5M1 114 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 PSAT1Q9Y617 370 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 C2CD3Q4AC94 2353 aa7.52□□□□□ -1.21
VIM-202ENST00000421459 MAP1AP78559 2803 aaPredicted RBP7.51□□□□□ -1.21
VIM-202ENST00000421459 NIPBLQ6KC79 2804 aaeCLIP7.51□□□□□ -1.212e-7■■□□□ 12.4
VIM-202ENST00000421459 ATP6AP2A0A1C7CYW4 349 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 LRIT2A6NDA9 550 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 PABPN1LA6NDY0 278 aaKnown RBP7.51□□□□□ -1.21
VIM-202ENST00000421459 NCF1BA6NI72 391 aaPredicted RBP7.51□□□□□ -1.21
VIM-202ENST00000421459 NCF1CA8MVU1 366 aaPredicted RBP7.51□□□□□ -1.21
VIM-202ENST00000421459 KDM4EB2RXH2 506 aaPredicted RBP7.51□□□□□ -1.21
VIM-202ENST00000421459 CYR61O00622 381 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 KLK8O60259 260 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 SH3BGRLO75368 114 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 ATP6AP2O75787 350 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 PIAS1O75925 651 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 ZFAND5O76080 213 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 GLSO94925 669 aaPredicted RBP7.51□□□□□ -1.21
VIM-202ENST00000421459 WDR47O94967 919 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 TUBB4AP04350 444 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 IFNA16P05015 189 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 SERPINA6P08185 405 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 C1GALT1C1LP0DN25 315 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 CCL3P10147 92 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 NCF1P14598 390 aaPredicted RBP7.51□□□□□ -1.21
VIM-202ENST00000421459 CD1EP15812 388 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 CERS1P27544 350 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 PIGAP37287 484 aa7.51□□□□□ -1.21
VIM-202ENST00000421459 HK2P52789 917 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms