RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 CERS1P27544 350 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 TRHRP34981 398 aaPredicted RBP10.79□□□□□ -0.68
USP4-204ENST00000416417 SLC6A12P48065 614 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 HSPA7P48741 367 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 STXBP1P61764 594 aaKnown RBP10.79□□□□□ -0.68
USP4-204ENST00000416417 SLC13A2Q13183 592 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 OR4D1Q15615 310 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 XKR6Q5GH73 641 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 TMIGD1Q6UXZ0 262 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 CEP128Q6ZU80 1094 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 CD163Q86VB7 1156 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 SCUBE1Q8IWY4 988 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 ZBED8Q8IZ13 594 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 CYP4Z2PQ8N1L4 340 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 RPRMLQ8N4K4 120 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 TMEM156Q8N614 296 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 ZNF321PQ8N8H1 164 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 SNX31Q8N9S9 440 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 ARMC2Q8NEN0 867 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 B3GNT7Q8NFL0 401 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 OR52N2Q8NGI0 321 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 EXT2Q93063 718 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 GAL3ST3Q96A11 431 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 SDCCAG3Q96C92 435 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 LRRC39Q96DD0 335 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 VPS39Q96JC1 886 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 QRFPRQ96P65 431 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 KRT12Q99456 494 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 DEFB127Q9H1M4 99 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 RUBCNLQ9H714 662 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 TRIM45Q9H8W5 580 aaPredicted RBP10.79□□□□□ -0.68
USP4-204ENST00000416417 DEPPQ9NTK1 212 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 KCMF1Q9P0J7 381 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 PPT2Q9UMR5 302 aa10.79□□□□□ -0.68
USP4-204ENST00000416417 A0A0G2JMM0 328 aa10.78□□□□□ -0.68
USP4-204ENST00000416417 A0A1W2PPB8 328 aa10.78□□□□□ -0.68
USP4-204ENST00000416417 A0A1W2PRS3 328 aa10.78□□□□□ -0.68
USP4-204ENST00000416417 TMEM200CA6NKL6 621 aa10.78□□□□□ -0.68
USP4-204ENST00000416417 EFCAB8A8MWE9 144 aa10.78□□□□□ -0.68
USP4-204ENST00000416417 KIR3DP1A8MWS1 328 aa10.78□□□□□ -0.68
USP4-204ENST00000416417 CLGNO14967 610 aa10.78□□□□□ -0.68
USP4-204ENST00000416417 GNAZP19086 355 aa10.78□□□□□ -0.68
USP4-204ENST00000416417 CD22P20273 847 aa10.78□□□□□ -0.68
USP4-204ENST00000416417 SSTR1P30872 391 aa10.78□□□□□ -0.68
USP4-204ENST00000416417 PTGER4P35408 488 aa10.78□□□□□ -0.68
USP4-204ENST00000416417 CLCN2P51788 898 aa10.78□□□□□ -0.68
USP4-204ENST00000416417 RAB38P57729 211 aa10.78□□□□□ -0.68
USP4-204ENST00000416417 GNG11P61952 73 aa10.78□□□□□ -0.68
USP4-204ENST00000416417 CDKL1Q00532 357 aa10.78□□□□□ -0.68
USP4-204ENST00000416417 ID2Q02363 134 aa10.78□□□□□ -0.68
USP4-204ENST00000416417 TGFBIQ15582 683 aa10.78□□□□□ -0.68
USP4-204ENST00000416417 CMPK2Q5EBM0 449 aa10.78□□□□□ -0.68
USP4-204ENST00000416417 NIPAL1Q6NVV3 410 aa10.78□□□□□ -0.68
USP4-204ENST00000416417 SYDE1Q6ZW31 735 aaPredicted RBP10.78□□□□□ -0.68
USP4-204ENST00000416417 MARVELD2Q8N4S9 558 aa10.78□□□□□ -0.68
USP4-204ENST00000416417 F2RL3Q96RI0 385 aa10.78□□□□□ -0.68
USP4-204ENST00000416417 DMRTA2Q96SC8 542 aa10.78□□□□□ -0.68
USP4-204ENST00000416417 MCMBPQ9BTE3 642 aa10.78□□□□□ -0.68
USP4-204ENST00000416417 DPH5Q9H2P9 285 aa10.78□□□□□ -0.68
USP4-204ENST00000416417 WWOXQ9NZC7 414 aa10.78□□□□□ -0.68
USP4-204ENST00000416417 ZNF490Q9ULM2 529 aaPredicted RBP10.78□□□□□ -0.68
USP4-204ENST00000416417 KLF13Q9Y2Y9 288 aaPredicted RBP10.78□□□□□ -0.68
USP4-204ENST00000416417 TACC2O95359 2948 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 FAM166BA8MTA8 275 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 WWP2O00308 870 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 RTCAO00442 366 aaKnown RBP10.77□□□□□ -0.69
USP4-204ENST00000416417 PRRG2O14669 202 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 FANCGO15287 622 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 B3GALT2O43825 422 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 OR2J2O76002 312 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 OR6B1O95007 311 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 WISP3O95389 354 aaPredicted RBP10.77□□□□□ -0.69
USP4-204ENST00000416417 IFNA16P05015 189 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 CCDC166P0CW27 439 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 PTGS2P35354 604 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 KCNC1P48547 511 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 HNMTP50135 292 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 GPR143P51810 404 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 SLC12A2P55011 1212 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 LIM2P55344 173 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 BMPR2Q13873 1038 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 DOC2AQ14183 400 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 FRG1Q14331 258 aaKnown RBP10.77□□□□□ -0.69
USP4-204ENST00000416417 IL20RBQ6UXL0 311 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 ADAMTSL2Q86TH1 951 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 GPSM1Q86YR5 675 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 RNF175Q8N4F7 328 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 DOK4Q8TEW6 326 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 VMP1Q96GC9 406 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 REXO4Q9GZR2 422 aaKnown RBP10.77□□□□□ -0.69
USP4-204ENST00000416417 RHOJQ9H4E5 214 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 CLK4Q9HAZ1 481 aaKnown RBP10.77□□□□□ -0.69
USP4-204ENST00000416417 PRM3Q9NNZ6 103 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 SAYSD1Q9NPB0 183 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 DNAJC11Q9NVH1 559 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 MMACHCQ9Y4U1 282 aa10.77□□□□□ -0.69
USP4-204ENST00000416417 NCOA6Q14686 2063 aaPredicted RBP10.76□□□□□ -0.69
USP4-204ENST00000416417 ANKDD1BA6NHY2 528 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 E7ESA3 106 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 E9PLN8 166 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms