RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 VIPR1P32241 457 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 PIK3CBP42338 1070 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 CTSOP43234 321 aaPredicted RBP9.38□□□□□ -0.91
CD44-206ENST00000415148 PRIM2P49643 509 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 STK19P49842 368 aaPredicted RBP9.38□□□□□ -0.91
CD44-206ENST00000415148 CDH12P55289 794 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 ZNF763Q0D2J5 394 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 MADCAM1Q13477 382 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 PDE7AQ13946 482 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 FAM214AQ32MH5 1076 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 EEF1AKMT2Q5JPI9 291 aaKnown RBP9.38□□□□□ -0.91
CD44-206ENST00000415148 SPANXN2Q5MJ10 180 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 LHX8Q68G74 356 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 GDPD4Q6W3E5 623 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 DPY19L3Q6ZPD9 716 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 PRR23CQ6ZRP0 262 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 NRARPQ7Z6K4 114 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 CCDC190Q86UF4 302 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 HS6ST3Q8IZP7 471 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 FBXO15Q8NCQ5 510 aaPredicted RBP9.38□□□□□ -0.91
CD44-206ENST00000415148 MRPS31Q92665 395 aaKnown RBP9.38□□□□□ -0.91
CD44-206ENST00000415148 TMEM159Q96B96 161 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 SLC35A5Q9BS91 424 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 CCM2Q9BSQ5 444 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 C3orf14Q9HBI5 128 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 ACER3Q9NUN7 267 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 CLN6Q9NWW5 311 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 MS4A12Q9NXJ0 267 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 CFAP97Q9P2B7 532 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 CRNNQ9UBG3 495 aaPredicted RBP9.38□□□□□ -0.91
CD44-206ENST00000415148 EXO1Q9UQ84 846 aaKnown RBP9.38□□□□□ -0.91
CD44-206ENST00000415148 TRAPPC4Q9Y296 219 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 CFAP20Q9Y6A4 193 aaKnown RBP9.38□□□□□ -0.91
CD44-206ENST00000415148 SLC5A10A0PJK1 596 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 KIAA0513O60268 411 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 SEMA3DO95025 777 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 CCNB2O95067 398 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 KRT75O95678 551 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 APOA1P02647 267 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 ETFAP13804 333 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 ZNF8P17098 575 aaPredicted RBP9.37□□□□□ -0.91
CD44-206ENST00000415148 RHCEP18577 417 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 CBLP22681 906 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 TIE1P35590 1138 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 HBA1P69905 142 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 PTGES3Q15185 160 aaKnown RBP9.37□□□□□ -0.91
CD44-206ENST00000415148 AGAP6Q5VW22 663 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 SLX4IPQ5VYV7 408 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 ZNF852Q6ZMS4 543 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 GDPGP1Q6ZNW5 385 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 SLCO4C1Q6ZQN7 724 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 WDR53Q7Z5U6 358 aaPredicted RBP9.37□□□□□ -0.91
CD44-206ENST00000415148 B3GNT7Q8NFL0 401 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 OR9Q2Q8NGE9 314 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 UTP15Q8TED0 518 aaKnown RBP9.37□□□□□ -0.91
CD44-206ENST00000415148 MED8Q96G25 268 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 FOPNLQ96NB1 174 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 AGAP4Q96P64 663 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 TRNT1Q96Q11 434 aaKnown RBP9.37□□□□□ -0.91
CD44-206ENST00000415148 VPS35Q96QK1 796 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 ZSCAN5AQ9BUG6 496 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 TMEM121BQ9BXQ6 578 aaPredicted RBP9.37□□□□□ -0.91
CD44-206ENST00000415148 CD84Q9UIB8 345 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 MUTYHQ9UIF7 546 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 HELZP42694 1942 aaKnown RBP9.37□□□□□ -0.91
CD44-206ENST00000415148 USP34Q70CQ2 3546 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 NINQ8N4C6 2090 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 ZAR1LA6NP61 321 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 H3BM21 787 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 CCRL2O00421 344 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 RGS13O14921 159 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 NPC1O15118 1278 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 GADD45GO95257 159 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 FURINP09958 794 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 CD72P21854 359 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 HOXD10P28358 340 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 IMPA1P29218 277 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 SLC15A1P46059 708 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 HTR3AP46098 478 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 RFX2P48378 723 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 PCBP3P57721 371 aaKnown RBP9.37□□□□□ -0.91
CD44-206ENST00000415148 RPS13P62277 151 aaKnown RBP9.37□□□□□ -0.91
CD44-206ENST00000415148 CDK6Q00534 326 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 LRRC26Q2I0M4 334 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 SYTL3Q4VX76 610 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 ZNF385BQ569K4 471 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 Q5BKY6 102 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 COX20Q5RI15 118 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 PLAG1Q6DJT9 500 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 LAS2Q8IYD9 372 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 LILRB4Q8NHJ6 448 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 NFKBIDQ8NI38 313 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 VANGL1Q8TAA9 524 aaPredicted RBP9.37□□□□□ -0.91
CD44-206ENST00000415148 BTN2A2Q8WVV5 523 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 FOXJ1Q92949 421 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 TRMT61AQ96FX7 289 aaKnown RBP9.37□□□□□ -0.91
CD44-206ENST00000415148 PKP4Q99569 1192 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 MGLLQ99685 303 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 TCF25Q9BQ70 676 aa9.37□□□□□ -0.91
CD44-206ENST00000415148 BARHL1Q9BZE3 327 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms