RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 NBASA2RRP1 2371 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 MYO18BQ8IUG5 2567 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 IGKV3D-11A0A0A0MRZ8 115 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 SAP18O00422 153 aaKnown RBP13.9□□□□□ -0.18
LIMS4-201ENST00000413601 RTCAO00442 366 aaKnown RBP13.9□□□□□ -0.18
LIMS4-201ENST00000413601 VPS4BO75351 444 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 SBK3P0C264 359 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 PIK3CGP48736 1102 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 HNRNPFP52597 415 aaKnown RBP13.9□□□□□ -0.18
LIMS4-201ENST00000413601 LIM2P55344 173 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 RAB38P57729 211 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 SLC26A5P58743 744 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 ARG2P78540 354 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 ZNF33BQ06732 778 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 ZNF169Q14929 603 aaPredicted RBP13.9□□□□□ -0.18
LIMS4-201ENST00000413601 CPSF6Q16630 551 aaKnown RBP eCLIP13.9□□□□□ -0.18
LIMS4-201ENST00000413601 ABHD17BQ5VST6 288 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 FCRLBQ6BAA4 426 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 METTL2BQ6P1Q9 378 aaKnown RBP13.9□□□□□ -0.18
LIMS4-201ENST00000413601 ZNF793Q6ZN11 406 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 TIFABQ6ZNK6 161 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 CHSY3Q70JA7 882 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 EIF1ADQ8N9N8 165 aaKnown RBP13.9□□□□□ -0.18
LIMS4-201ENST00000413601 FAM47BQ8NA70 645 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 TMEM52Q8NDY8 209 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 HUS1BQ8NHY5 278 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 M1APQ8TC57 530 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 MTBPQ96DY7 904 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 CMTM7Q96FZ5 175 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 KCNC2Q96PR1 638 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 MTERF1Q99551 399 aaKnown RBP13.9□□□□□ -0.18
LIMS4-201ENST00000413601 MRPL57Q9BQC6 102 aaKnown RBP13.9□□□□□ -0.18
LIMS4-201ENST00000413601 OR51B5Q9H339 312 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 NOL11Q9H8H0 719 aaKnown RBP13.9□□□□□ -0.18
LIMS4-201ENST00000413601 KCNK13Q9HB14 408 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 ASF1BQ9NVP2 202 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 STMN3Q9NZ72 180 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 TBK1Q9UHD2 729 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 DAPP1Q9UN19 280 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 VPS4AQ9UN37 437 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 RNF11Q9Y3C5 154 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 PCDHGA11Q9Y5H2 935 aa13.9□□□□□ -0.18
LIMS4-201ENST00000413601 IQANK1A0A1B0GTG1 560 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 TCRBV16S1A1N1A0A5B0 115 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 DYTNA2CJ06 578 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 A8MUA0 341 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 STX16-NPEPL1H3BU86 382 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 GOLGA8RI6L899 631 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 OR7A17O14581 309 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 STX16O14662 325 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 UGDHO60701 494 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 WDPCPO95876 746 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 ATP5A1P25705 553 aaKnown RBP13.89□□□□□ -0.19
LIMS4-201ENST00000413601 SERPINB1P30740 379 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 ARL1P40616 181 aaPredicted RBP13.89□□□□□ -0.19
LIMS4-201ENST00000413601 UQCRFS1P47985 274 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 TLR1Q15399 786 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 TMEM35AQ53FP2 167 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 KHDRBS2Q5VWX1 349 aaKnown RBP13.89□□□□□ -0.19
LIMS4-201ENST00000413601 H3F3CQ6NXT2 135 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 RPS27LQ71UM5 84 aaKnown RBP13.89□□□□□ -0.19
LIMS4-201ENST00000413601 TMEM151AQ8N4L1 468 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 L3MBTL4Q8NA19 623 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 GALNT11Q8NCW6 608 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 SRFBP1Q8NEF9 429 aaKnown RBP13.89□□□□□ -0.19
LIMS4-201ENST00000413601 ARMC2Q8NEN0 867 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 OR52B6Q8NGF0 335 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 UBLCP1Q8WVY7 318 aaPredicted RBP13.89□□□□□ -0.19
LIMS4-201ENST00000413601 HAS2Q92819 552 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 ATP6V1E2Q96A05 226 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 NSUN5Q96P11 429 aaKnown RBP13.89□□□□□ -0.19
LIMS4-201ENST00000413601 CDK15Q96Q40 435 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 CSF3RQ99062 836 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 TBCDQ9BTW9 1192 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 SORBS1Q9BX66 1292 aaKnown RBP13.89□□□□□ -0.19
LIMS4-201ENST00000413601 MRPL46Q9H2W6 279 aaKnown RBP13.89□□□□□ -0.19
LIMS4-201ENST00000413601 MMP25Q9NPA2 562 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 PRTFDC1Q9NRG1 225 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 PSMC3IPQ9P2W1 217 aaPredicted RBP13.89□□□□□ -0.19
LIMS4-201ENST00000413601 FETUBQ9UGM5 382 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 ADGRE2Q9UHX3 823 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 PCTPQ9UKL6 214 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 NTNG1Q9Y2I2 539 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 MMACHCQ9Y4U1 282 aa13.89□□□□□ -0.19
LIMS4-201ENST00000413601 COPG1Q9Y678 874 aaKnown RBP13.89□□□□□ -0.19
LIMS4-201ENST00000413601 UBR5O95071 2799 aaPredicted RBP13.88□□□□□ -0.19
LIMS4-201ENST00000413601 H0YIV9 168 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 TGFBR3LH3BV60 316 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 CYR61O00622 381 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 CLDN4O14493 209 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 CLDN9O95484 217 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 SHBGP04278 402 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 GNLYP22749 145 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 TNFRSF8P28908 595 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 PIK3CBP42338 1070 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 SSR2P43308 183 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 TNFSF10P50591 281 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 CCNG1P51959 295 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 HSD17B7P56937 341 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 RPS13P62277 151 aaKnown RBP13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms