RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 NPPAP01160 153 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 EIF2S1P05198 315 aaKnown RBP6.31□□□□□ -1.4
VPS41-204ENST00000413141 RPLP0P05388 317 aaKnown RBP6.31□□□□□ -1.4
VPS41-204ENST00000413141 CTSBP07858 339 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 RETP07949 1114 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 FAM58BPP0C7Q3 252 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 SMIM10L1P0DMW3 83 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 LAMP1P11279 417 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 DDCP20711 480 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 SLC6A2P23975 617 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 CDKN2CP42773 168 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 GRK6P43250 576 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 SLC7A2P52569 658 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 HNRNPFP52597 415 aaKnown RBP6.31□□□□□ -1.4
VPS41-204ENST00000413141 ATXN3P54252 364 aaPredicted RBP6.31□□□□□ -1.4
VPS41-204ENST00000413141 WNT3P56703 355 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 BTN3A2P78410 334 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 ELF3P78545 371 aaPredicted RBP6.31□□□□□ -1.4
VPS41-204ENST00000413141 DAB2P98082 770 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 MC1RQ01726 317 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 C2orf80Q0P641 193 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 SLAMF1Q13291 335 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 SQSTM1Q13501 440 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 CEACAM7Q14002 265 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 SLC9A5Q14940 896 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 HEPACAMQ14CZ8 416 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 SUZ12Q15022 739 aaKnown RBP6.31□□□□□ -1.4
VPS41-204ENST00000413141 PRTGQ2VWP7 1150 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 INAVAQ3KP66 663 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 DEFB134Q4QY38 66 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 PIGGQ5H8A4 983 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 MANEAQ5SRI9 462 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 C6orf10Q5SRN2 563 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 LRIF1Q5T3J3 769 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 CPTPQ5TA50 214 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 MRM1Q6IN84 353 aaKnown RBP6.31□□□□□ -1.4
VPS41-204ENST00000413141 DLEU7Q6UYE1 221 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 PRSS41Q7RTY9 318 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 TMPRSS9Q7Z410 1059 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 ARPINQ7Z6K5 226 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 ANKRD46Q86W74 232 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 KMT5CQ86Y97 462 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 PDSS2Q86YH6 399 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 HPS6Q86YV9 775 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 TICAM1Q8IUC6 712 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 MCATQ8IVS2 390 aaKnown RBP6.31□□□□□ -1.4
VPS41-204ENST00000413141 MSRB3Q8IXL7 192 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 KIAA2013Q8IYS2 634 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 FBXW8Q8N3Y1 598 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 ARHGEF39Q8N4T4 335 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 SUMF1Q8NBK3 374 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 DNAJB8Q8NHS0 232 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 IFI44Q8TCB0 444 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 KLHL6Q8WZ60 621 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 TMEM125Q96AQ2 219 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 PPCDCQ96CD2 204 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 TM4SF18Q96CE8 201 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 CCDC124Q96CT7 223 aaKnown RBP6.31□□□□□ -1.4
VPS41-204ENST00000413141 COQ8BQ96D53 544 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 SMIM10Q96HG1 83 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 ITCHQ96J02 903 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 SLC41A2Q96JW4 573 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 ZNF285Q96NJ3 590 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 CCDC115Q96NT0 180 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 CDRT15Q96T59 188 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 PRPF18Q99633 342 aaKnown RBP6.31□□□□□ -1.4
VPS41-204ENST00000413141 CGREF1Q99674 301 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 HOPXQ9BPY8 73 aaPredicted RBP6.31□□□□□ -1.4
VPS41-204ENST00000413141 COL25A1Q9BXS0 654 aaPredicted RBP6.31□□□□□ -1.4
VPS41-204ENST00000413141 NLNQ9BYT8 704 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 TRIM8Q9BZR9 551 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 BHLHE41Q9C0J9 482 aaPredicted RBP6.31□□□□□ -1.4
VPS41-204ENST00000413141 PAIP1Q9H074 479 aaKnown RBP6.31□□□□□ -1.4
VPS41-204ENST00000413141 ZNF768Q9H5H4 540 aaKnown RBP6.31□□□□□ -1.4
VPS41-204ENST00000413141 RMND5AQ9H871 391 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 PDE7BQ9NP56 450 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 STARD5Q9NSY2 213 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 ATAD3AQ9NVI7 634 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 LYARQ9NX58 379 aaKnown RBP6.31□□□□□ -1.4
VPS41-204ENST00000413141 ADA2Q9NZK5 511 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 SLAMF8Q9P0V8 285 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 SEMA5BQ9P283 1151 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 TMEM181Q9P2C4 612 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 BTNL2Q9UIR0 455 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 PLCL2Q9UPR0 1127 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 ASB4Q9Y574 426 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 PCDHGB2Q9Y5G2 931 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 SDK1Q7Z5N4 2213 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 LAMA1P25391 3075 aa6.31□□□□□ -1.4
VPS41-204ENST00000413141 A0A1W2PQM1 296 aa6.3□□□□□ -1.4
VPS41-204ENST00000413141 C2orf72A6NCS6 295 aa6.3□□□□□ -1.4
VPS41-204ENST00000413141 PRORSD1PA6NEY8 169 aa6.3□□□□□ -1.4
VPS41-204ENST00000413141 RNASET2O00584 256 aaKnown RBP6.3□□□□□ -1.4
VPS41-204ENST00000413141 NME4O00746 187 aa6.3□□□□□ -1.4
VPS41-204ENST00000413141 TXNDC9O14530 226 aa6.3□□□□□ -1.4
VPS41-204ENST00000413141 RFXANKO14593 260 aa6.3□□□□□ -1.4
VPS41-204ENST00000413141 TOX3O15405 576 aaPredicted RBP6.3□□□□□ -1.4
VPS41-204ENST00000413141 PDPK1O15530 556 aa6.3□□□□□ -1.4
VPS41-204ENST00000413141 FLRT2O43155 660 aa6.3□□□□□ -1.4
VPS41-204ENST00000413141 MAP3K7O43318 606 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms