RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 KLF6Q99612 283 aaPredicted RBP6.15□□□□□ -1.43
USP40-202ENST00000409945 NAPGQ99747 312 aaPredicted RBP6.15□□□□□ -1.43
USP40-202ENST00000409945 PIP5K1AQ99755 562 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 NPLQ9BXD5 320 aaPredicted RBP6.15□□□□□ -1.43
USP40-202ENST00000409945 QTRT1Q9BXR0 403 aaKnown RBP6.15□□□□□ -1.43
USP40-202ENST00000409945 TDRD1Q9BXT4 1180 aaKnown RBP6.15□□□□□ -1.43
USP40-202ENST00000409945 CADM1Q9BY67 442 aaKnown RBP6.15□□□□□ -1.43
USP40-202ENST00000409945 SLC25A51Q9H1U9 297 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 CTNNAL1Q9UBT7 734 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 ANKRD36A6QL64 1941 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 TP53BP1Q12888 1972 aaPredicted RBP6.14□□□□□ -1.43
USP40-202ENST00000409945 PCNX2A6NKB5 2137 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 TMEM131Q92545 1883 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 hCG_1818297A0A087WSY0 165 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 C1orf232A0A0U1RR37 186 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 A0A1W2PQM1 296 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 A8MX80 341 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 RNF103O00237 685 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 RAD51BO15315 384 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 DOK2O60496 412 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 ANXA9O76027 345 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 NEURL1O76050 574 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 HLA-DQB2P05538 268 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 CHRM4P08173 479 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 H2AFXP16104 143 aaPredicted RBP6.14□□□□□ -1.43
USP40-202ENST00000409945 CTPS1P17812 591 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 KIAA1024LP59773 190 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 SRP54P61011 504 aaKnown RBP6.14□□□□□ -1.43
USP40-202ENST00000409945 EFNB1P98172 346 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 FZD2Q14332 565 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 WHAMMP3Q1A5X7 153 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 WSCD2Q2TBF2 565 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 ZDHHC20Q5W0Z9 365 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 PAPD7Q5XG87 772 aaKnown RBP6.14□□□□□ -1.43
USP40-202ENST00000409945 SUMO4Q6EEV6 95 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 PNCKQ6P2M8 343 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 PID1Q7Z2X4 250 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 TMPRSS12Q86WS5 348 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 SLC22A18ASQ8N1D0 253 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 PGBD5Q8N414 524 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 ZNF548Q8NEK5 533 aaPredicted RBP6.14□□□□□ -1.43
USP40-202ENST00000409945 NFKBIDQ8NI38 313 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 HTR3CQ8WXA8 447 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 AP2M1Q96CW1 435 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 KLHL15Q96M94 604 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 OLFM3Q96PB7 478 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 MCCC1Q96RQ3 725 aaPredicted RBP6.14□□□□□ -1.43
USP40-202ENST00000409945 CD180Q99467 661 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 CARD6Q9BX69 1037 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 OSBPL8Q9BZF1 889 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 FAM153AQ9UHL3 310 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 UTS2RQ9UKP6 389 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 CHKBQ9Y259 395 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 BTBD3Q9Y2F9 522 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 AAR2Q9Y312 384 aaKnown RBP6.14□□□□□ -1.43
USP40-202ENST00000409945 PPIL1Q9Y3C6 166 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 DCHS1Q96JQ0 3298 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 DNAH14Q0VDD8 3507 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 NCOR2Q9Y618 2525 aa6.14□□□□□ -1.43
USP40-202ENST00000409945 KRTAP4-8A0A0G2JLE6 195 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 ANKRD66B4E2M5 251 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 LMO7DNF2Z398 122 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 UGDHO60701 494 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 GAS8O95995 478 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 PRKCGP05129 697 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 GP1BAP07359 652 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 TUBBP07437 444 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 BMP5P22003 454 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 ACP1P24666 158 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 TEAD1P28347 426 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 GEMP55040 296 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 PDE1BQ01064 536 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 ILF3Q12906 894 aaKnown RBP eCLIP6.13□□□□□ -1.43
USP40-202ENST00000409945 SLC10A2Q12908 348 aaPredicted RBP6.13□□□□□ -1.43
USP40-202ENST00000409945 GALNT3Q14435 633 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 TOMM20Q15388 145 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 TAZQ16635 292 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 GLE1Q53GS7 698 aaKnown RBP6.13□□□□□ -1.43
USP40-202ENST00000409945 ZNF542PQ5EBM4 170 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 LRRC66Q68CR7 880 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 B4GALNT4Q76KP1 1039 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 TAF8Q7Z7C8 310 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 CCDC25Q86WR0 208 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 SLC35F6Q8N357 371 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 CHCHD4Q8N4Q1 142 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 SEMA6DQ8NFY4 1073 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 PIH1D2Q8WWB5 315 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 MAIP1Q8WWC4 291 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 NCSTNQ92542 709 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 DTD2Q96FN9 168 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 GSDMCQ9BYG8 508 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 TRABDQ9H4I3 376 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 MBNL1Q9NR56 388 aaKnown RBP6.13□□□□□ -1.43
USP40-202ENST00000409945 HACD3Q9P035 362 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 RSPH14Q9UHP6 348 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 ZNHIT2Q9UHR6 403 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 GUCA1BQ9UMX6 200 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 OR1A2Q9Y585 309 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 PSAT1Q9Y617 370 aa6.13□□□□□ -1.43
USP40-202ENST00000409945 V9GYY5 206 aaPredicted RBP6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms