RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 ZNF431Q8TF32 576 aaPredicted RBP7.03□□□□□ -1.28
SCN9A-202ENST00000409435 SLC6A16Q9GZN6 736 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 MTG2Q9H4K7 406 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 APOBEC3GQ9HC16 384 aaKnown RBP7.03□□□□□ -1.28
SCN9A-202ENST00000409435 PRMT8Q9NR22 394 aaPredicted RBP7.03□□□□□ -1.28
SCN9A-202ENST00000409435 ZNF282Q9UDV7 671 aaPredicted RBP7.03□□□□□ -1.28
SCN9A-202ENST00000409435 UBQLN2Q9UHD9 624 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 PCDHGB5Q9Y5G0 923 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 RBMXL2O75526 392 aaKnown RBP7.03□□□□□ -1.28
SCN9A-202ENST00000409435 CDC123O75794 336 aaPredicted RBP7.03□□□□□ -1.28
SCN9A-202ENST00000409435 OR5F1O95221 314 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 VNN1O95497 513 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 OAS1P00973 400 aaKnown RBP7.03□□□□□ -1.28
SCN9A-202ENST00000409435 CYP1A2P05177 515 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 GDF1P27539 372 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 HTR2AP28223 471 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 BDKRB1P46663 353 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 RPS15AP62244 130 aaKnown RBP7.03□□□□□ -1.28
SCN9A-202ENST00000409435 MED22Q15528 200 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 IL17AQ16552 155 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 BORAQ6PGQ7 559 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 RP9Q8TA86 221 aaKnown RBP7.03□□□□□ -1.28
SCN9A-202ENST00000409435 HES7Q9BYE0 225 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 RBCK1Q9BYM8 510 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 ZNF639Q9UID6 485 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 ANGPT4Q9Y264 503 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 RBM7Q9Y580 266 aaKnown RBP7.03□□□□□ -1.28
SCN9A-202ENST00000409435 A0A0J9YY10 115 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 C12orf71A8MTZ7 269 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 SGCEO43556 437 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 IFNA10P01566 189 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 IFNA4P05014 189 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 CXCR1P25024 350 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 ITGB8P26012 769 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 SLC1A6P48664 564 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 C2orf80Q0P641 193 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 INTS11Q5TA45 600 aaKnown RBP7.03□□□□□ -1.28
SCN9A-202ENST00000409435 NUDT13Q86X67 352 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 KIF18BQ86Y91 864 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 ARMC8Q8IUR7 673 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 FOXRED2Q8IWF2 684 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 DAW1Q8N136 415 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 PTGR2Q8N8N7 351 aaPredicted RBP7.03□□□□□ -1.28
SCN9A-202ENST00000409435 CHST14Q8NCH0 376 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 ZNF548Q8NEK5 533 aaPredicted RBP7.03□□□□□ -1.28
SCN9A-202ENST00000409435 OR9A1PQ8NGU1 263 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 DPF1Q92782 380 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 PIF1Q9H611 641 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 CORO2BQ9UQ03 480 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 FAM237AA0A1B0GTK4 181 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 E7ENX8 843 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 SERPINB7O75635 380 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 CLPXO76031 633 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 PRAMEF12O95522 483 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 CYB5AP00167 134 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 IFNA17P01571 189 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 MMP8P22894 467 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 ETV5P41161 510 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 SLC10A7Q0GE19 358 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 FAM91A1Q658Y4 838 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 FIGLAQ6QHK4 219 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 MBOAT1Q6ZNC8 495 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 ZC3H7AQ8IWR0 971 aaKnown RBP7.03□□□□□ -1.28
SCN9A-202ENST00000409435 OFCC1Q8IZS5 231 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 WDSUB1Q8N9V3 476 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 ZSCAN4Q8NAM6 433 aaPredicted RBP7.03□□□□□ -1.28
SCN9A-202ENST00000409435 C3orf58Q8NDZ4 430 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.03□□□□□ -1.28
SCN9A-202ENST00000409435 PPP3R2Q96LZ3 170 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 IKZF4Q9H2S9 585 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 ACTL8Q9H568 366 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 ABCB9Q9NP78 766 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 PIGVQ9NUD9 493 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 GFOD1Q9NXC2 390 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 FBXO5Q9UKT4 447 aa7.03□□□□□ -1.28
SCN9A-202ENST00000409435 L7N2F9 121 aa7.02□□□□□ -1.28
SCN9A-202ENST00000409435 SEC14L5O43304 696 aa7.02□□□□□ -1.28
SCN9A-202ENST00000409435 ARFIP1P53367 373 aa7.02□□□□□ -1.28
SCN9A-202ENST00000409435 PITPNAQ00169 270 aa7.02□□□□□ -1.28
SCN9A-202ENST00000409435 SCGB2A2Q13296 93 aa7.02□□□□□ -1.28
SCN9A-202ENST00000409435 NFE2L1Q14494 772 aa7.02□□□□□ -1.28
SCN9A-202ENST00000409435 PTGES3Q15185 160 aaKnown RBP7.02□□□□□ -1.28
SCN9A-202ENST00000409435 AKR1C8PQ5T2L2 129 aa7.02□□□□□ -1.28
SCN9A-202ENST00000409435 ZNF585AQ6P3V2 769 aa7.02□□□□□ -1.28
SCN9A-202ENST00000409435 SLC26A11Q86WA9 606 aa7.02□□□□□ -1.28
SCN9A-202ENST00000409435 OR4A15Q8NGL6 344 aa7.02□□□□□ -1.28
SCN9A-202ENST00000409435 CA5BP1Q8WTZ4 195 aa7.02□□□□□ -1.28
SCN9A-202ENST00000409435 LRRN4Q8WUT4 740 aa7.02□□□□□ -1.28
SCN9A-202ENST00000409435 ITCHQ96J02 903 aa7.02□□□□□ -1.28
SCN9A-202ENST00000409435 GPR21Q99679 349 aa7.02□□□□□ -1.28
SCN9A-202ENST00000409435 CHIAQ9BZP6 476 aa7.02□□□□□ -1.28
SCN9A-202ENST00000409435 TRPS1Q9UHF7 1281 aa7.02□□□□□ -1.28
SCN9A-202ENST00000409435 VWA7Q9Y334 891 aa7.02□□□□□ -1.28
SCN9A-202ENST00000409435 CCDC88AQ3V6T2 1871 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 GPR89AB7ZAQ6 455 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 SLC33A1O00400 549 aaPredicted RBP7.02□□□□□ -1.29
SCN9A-202ENST00000409435 HOXC11O43248 304 aaPredicted RBP7.02□□□□□ -1.29
SCN9A-202ENST00000409435 FARS2O95363 451 aaKnown RBP7.02□□□□□ -1.29
SCN9A-202ENST00000409435 IFNA2P01563 188 aa7.02□□□□□ -1.29
SCN9A-202ENST00000409435 GPR89BP0CG08 455 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms