RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 C1QL3Q5VWW1 255 aa18.05■□□□□ 0.48
SMARCB1-204ENST00000407422 TBC1D1Q86TI0 1168 aaPredicted RBP18.05■□□□□ 0.48
SMARCB1-204ENST00000407422 FJX1Q86VR8 437 aa18.05■□□□□ 0.48
SMARCB1-204ENST00000407422 RPS19BP1Q86WX3 136 aaKnown RBP18.05■□□□□ 0.48
SMARCB1-204ENST00000407422 FAM47BQ8NA70 645 aa18.05■□□□□ 0.48
SMARCB1-204ENST00000407422 DNAJB8Q8NHS0 232 aa18.05■□□□□ 0.48
SMARCB1-204ENST00000407422 NXNL1Q96CM4 212 aa18.05■□□□□ 0.48
SMARCB1-204ENST00000407422 F2RL3Q96RI0 385 aa18.05■□□□□ 0.48
SMARCB1-204ENST00000407422 EFCAB11Q9BUY7 163 aa18.05■□□□□ 0.48
SMARCB1-204ENST00000407422 NPLQ9BXD5 320 aaPredicted RBP18.05■□□□□ 0.48
SMARCB1-204ENST00000407422 NMRAL1Q9HBL8 299 aa18.05■□□□□ 0.48
SMARCB1-204ENST00000407422 NUDT4Q9NZJ9 180 aa18.05■□□□□ 0.48
SMARCB1-204ENST00000407422 CLDN16Q9Y5I7 305 aa18.05■□□□□ 0.48
SMARCB1-204ENST00000407422 PCNX1Q96RV3 2341 aa18.05■□□□□ 0.48
SMARCB1-204ENST00000407422 SUPT3HB4E1H0 165 aa18.04■□□□□ 0.48
SMARCB1-204ENST00000407422 B3GALT2O43825 422 aa18.04■□□□□ 0.48
SMARCB1-204ENST00000407422 SUPT3HO75486 399 aa18.04■□□□□ 0.48
SMARCB1-204ENST00000407422 NEURL1O76050 574 aa18.04■□□□□ 0.48
SMARCB1-204ENST00000407422 LTA4HP09960 611 aaKnown RBP18.04■□□□□ 0.48
SMARCB1-204ENST00000407422 CERS1P27544 350 aa18.04■□□□□ 0.48
SMARCB1-204ENST00000407422 TPP2P29144 1249 aaPredicted RBP18.04■□□□□ 0.48
SMARCB1-204ENST00000407422 PPP2R1BP30154 601 aa18.04■□□□□ 0.48
SMARCB1-204ENST00000407422 RAB38P57729 211 aa18.04■□□□□ 0.48
SMARCB1-204ENST00000407422 IRF8Q02556 426 aa18.04■□□□□ 0.48
SMARCB1-204ENST00000407422 MROH9Q5TGP6 573 aa18.04■□□□□ 0.48
SMARCB1-204ENST00000407422 TRIM40Q6P9F5 258 aa18.04■□□□□ 0.48
SMARCB1-204ENST00000407422 ABHD17CQ6PCB6 329 aa18.04■□□□□ 0.48
SMARCB1-204ENST00000407422 LRRC70Q7Z2Q7 622 aa18.04■□□□□ 0.48
SMARCB1-204ENST00000407422 SCUBE1Q8IWY4 988 aa18.04■□□□□ 0.48
SMARCB1-204ENST00000407422 CENPLQ8N0S6 344 aaPredicted RBP18.04■□□□□ 0.48
SMARCB1-204ENST00000407422 ARMC2Q8NEN0 867 aa18.04■□□□□ 0.48
SMARCB1-204ENST00000407422 KCTD4Q8WVF5 259 aa18.04■□□□□ 0.48
SMARCB1-204ENST00000407422 SCMH1Q96GD3 660 aa18.04■□□□□ 0.48
SMARCB1-204ENST00000407422 MMACHCQ9Y4U1 282 aa18.04■□□□□ 0.48
SMARCB1-204ENST00000407422 PCDHGB6Q9Y5F9 930 aa18.04■□□□□ 0.48
SMARCB1-204ENST00000407422 ZG16O60844 167 aa18.03■□□□□ 0.48
SMARCB1-204ENST00000407422 KERAO60938 352 aa18.03■□□□□ 0.48
SMARCB1-204ENST00000407422 URI1O94763 535 aaPredicted RBP18.03■□□□□ 0.48
SMARCB1-204ENST00000407422 MYO1DO94832 1006 aa18.03■□□□□ 0.48
SMARCB1-204ENST00000407422 LGI4Q8N135 537 aa18.03■□□□□ 0.48
SMARCB1-204ENST00000407422 APCDD1LQ8NCL9 501 aa18.03■□□□□ 0.48
SMARCB1-204ENST00000407422 CSF3RQ99062 836 aa18.03■□□□□ 0.48
SMARCB1-204ENST00000407422 PRDM7Q9NQW5 492 aa18.03■□□□□ 0.48
SMARCB1-204ENST00000407422 PRTFDC1Q9NRG1 225 aa18.03■□□□□ 0.48
SMARCB1-204ENST00000407422 PNO1Q9NRX1 252 aaKnown RBP18.03■□□□□ 0.48
SMARCB1-204ENST00000407422 LRFN1Q9P244 771 aa18.03■□□□□ 0.48
SMARCB1-204ENST00000407422 SEC14L3Q9UDX4 400 aa18.03■□□□□ 0.48
SMARCB1-204ENST00000407422 ACOT9Q9Y305 439 aa18.03■□□□□ 0.48
SMARCB1-204ENST00000407422 A0A088AWK7 358 aa18.02■□□□□ 0.48
SMARCB1-204ENST00000407422 SH3BGRLO75368 114 aa18.02■□□□□ 0.48
SMARCB1-204ENST00000407422 MTHFD2P13995 350 aa18.02■□□□□ 0.48
SMARCB1-204ENST00000407422 CD46P15529 392 aa18.02■□□□□ 0.48
SMARCB1-204ENST00000407422 ZNF10P21506 573 aaPredicted RBP18.02■□□□□ 0.48
SMARCB1-204ENST00000407422 MSH2P43246 934 aa18.02■□□□□ 0.48
SMARCB1-204ENST00000407422 MTTPP55157 894 aa18.02■□□□□ 0.48
SMARCB1-204ENST00000407422 LIM2P55344 173 aa18.02■□□□□ 0.48
SMARCB1-204ENST00000407422 MLF1P58340 268 aa18.02■□□□□ 0.48
SMARCB1-204ENST00000407422 SLC13A2Q13183 592 aa18.02■□□□□ 0.48
SMARCB1-204ENST00000407422 E2F2Q14209 437 aa18.02■□□□□ 0.48
SMARCB1-204ENST00000407422 TBCCQ15814 346 aa18.02■□□□□ 0.48
SMARCB1-204ENST00000407422 PAGE2BQ5JRK9 111 aa18.02■□□□□ 0.48
SMARCB1-204ENST00000407422 ZNF787Q6DD87 383 aa18.02■□□□□ 0.48
SMARCB1-204ENST00000407422 UBE3DQ7Z6J8 389 aa18.02■□□□□ 0.48
SMARCB1-204ENST00000407422 SERINC2Q96SA4 455 aa18.02■□□□□ 0.48
SMARCB1-204ENST00000407422 GTF3C1Q12789 2109 aa18.02■□□□□ 0.47
SMARCB1-204ENST00000407422 CYR61O00622 381 aa18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 C2P06681 752 aa18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 EEF1DP29692 281 aaKnown RBP18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 CASP2P42575 452 aa18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 HSD17B7P56937 341 aa18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 LAPTM5Q13571 262 aa18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 UAP1Q16222 522 aaPredicted RBP18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 HIST2H2ACQ16777 129 aaPredicted RBP18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 HIST2H2AA3Q6FI13 130 aa18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 GALNTL5Q7Z4T8 443 aa18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 CLNKQ7Z7G1 428 aa18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 ZNF227Q86WZ6 799 aa18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 B3GNT7Q8NFL0 401 aa18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 THAP3Q8WTV1 239 aaPredicted RBP18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 UBTD2Q8WUN7 234 aa18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 DEFB126Q9BYW3 111 aa18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 TSPAN10Q9H1Z9 355 aaPredicted RBP18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 COPS7BQ9H9Q2 264 aaPredicted RBP18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 SNX15Q9NRS6 342 aa18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 NINJ2Q9NZG7 142 aa18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 DAPP1Q9UN19 280 aa18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 TRBV11-1A0A0K0K1C0 115 aa18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 MYOCOSA0A1B0GUC4 107 aa18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 A0A1B0GUH1 482 aa18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 K7EPI3 171 aa18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 RTCAO00442 366 aaKnown RBP18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 CLDN4O14493 209 aa18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 SP1P08047 785 aa18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 HPDP32754 393 aaPredicted RBP18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 PER3P56645 1201 aa18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 ZRSR2Q15696 482 aaKnown RBP18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 ZNF793Q6ZN11 406 aa18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 ZNF473Q8WTR7 871 aaKnown RBP18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 MS4A8Q9BY19 250 aa18.01■□□□□ 0.47
SMARCB1-204ENST00000407422 OPTCQ9UBM4 332 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms