RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 FOXS1O43638 330 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 TMPRSS11DO60235 418 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 GUCY1B2O75343 617 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 RDH16O75452 317 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 TIAF1O95411 115 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 NSA2O95478 260 aaKnown RBP17.12■□□□□ 0.33
SDC1-203ENST00000403076 NTRK1P04629 796 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 FAM58BPP0C7Q3 252 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 TACR1P25103 407 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 ETV5P41161 510 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 ASMTP46597 345 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 TAS2R50P59544 299 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 OLR1P78380 273 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 ZNF763Q0D2J5 394 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 SQLEQ14534 574 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 PTGR1Q14914 329 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 C1orf189Q5VU69 101 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 RIPOR1Q6ZS17 1223 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 PDSS2Q86YH6 399 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 MIER2Q8N344 545 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 DTWD1Q8N5C7 304 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 LRRC37BQ96QE4 947 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 TAAR9Q96RI9 348 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 DPY30Q9C005 99 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 NMUR2Q9GZQ4 415 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 SAR1AQ9NR31 198 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 DLL3Q9NYJ7 618 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 PCDHB3Q9Y5E6 796 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 GPR45Q9Y5Y3 372 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 KIF26BQ2KJY2 2108 aa17.12■□□□□ 0.33
SDC1-203ENST00000403076 A0A1B0GX78 115 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 AKAP10O43572 662 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 SCELO95171 688 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 LRATO95237 230 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 IRX1P78414 480 aaPredicted RBP17.11■□□□□ 0.33
SDC1-203ENST00000403076 GABPB1Q06547 395 aaPredicted RBP17.11■□□□□ 0.33
SDC1-203ENST00000403076 TERF2Q15554 542 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 RHBDD2Q6NTF9 364 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 TMEM132CQ8N3T6 1108 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 EFCAB3Q8N7B9 438 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 GFM2Q969S9 779 aaKnown RBP17.11■□□□□ 0.33
SDC1-203ENST00000403076 MVB12AQ96EY5 273 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 EGLN2Q96KS0 407 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 YIPF2Q9BWQ6 316 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 ASPSCR1Q9BZE9 553 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 BRINP2Q9C0B6 783 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 MRGBPQ9NV56 204 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 SATB2Q9UPW6 733 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 MAU2Q9Y6X3 613 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 SPACA6W5XKT8 324 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 PMS2P1A4D2B8 440 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 PCSK2P16519 638 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 ATP4BP51164 291 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 TRA2BP62995 288 aaKnown RBP17.11■□□□□ 0.33
SDC1-203ENST00000403076 C2orf80Q0P641 193 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 RUNX2Q13950 521 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 UBAP2LQ14157 1087 aaKnown RBP17.11■□□□□ 0.33
SDC1-203ENST00000403076 PDCD4Q53EL6 469 aaKnown RBP17.11■□□□□ 0.33
SDC1-203ENST00000403076 TMEM164Q5U3C3 297 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 PRMT9Q6P2P2 845 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 GPR180Q86V85 440 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 MARCH9Q86YJ5 346 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 OR5T3Q8NGG3 340 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 COL26A1Q96A83 441 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 TM4SF18Q96CE8 201 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 ZBTB18Q99592 522 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 MAPKAP1Q9BPZ7 522 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 ZPBPQ9BS86 351 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 NPLQ9BXD5 320 aaPredicted RBP17.11■□□□□ 0.33
SDC1-203ENST00000403076 MYNNQ9NPC7 610 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 HCN3Q9P1Z3 774 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 PHF11Q9UIL8 331 aa17.11■□□□□ 0.33
SDC1-203ENST00000403076 H0YIG0 161 aa17.1■□□□□ 0.33
SDC1-203ENST00000403076 PSMD12O00232 456 aaPredicted RBP17.1■□□□□ 0.33
SDC1-203ENST00000403076 CHST10O43529 356 aa17.1■□□□□ 0.33
SDC1-203ENST00000403076 CPNE3O75131 537 aaKnown RBP17.1■□□□□ 0.33
SDC1-203ENST00000403076 KIAA0754O94854 1291 aa17.1■□□□□ 0.33
SDC1-203ENST00000403076 IL3P08700 152 aa17.1■□□□□ 0.33
SDC1-203ENST00000403076 CPN2P22792 545 aa17.1■□□□□ 0.33
SDC1-203ENST00000403076 GSTM5P46439 218 aa17.1■□□□□ 0.33
SDC1-203ENST00000403076 GCGRP47871 477 aa17.1■□□□□ 0.33
SDC1-203ENST00000403076 OR1D4P47884 311 aa17.1■□□□□ 0.33
SDC1-203ENST00000403076 LIM2P55344 173 aa17.1■□□□□ 0.33
SDC1-203ENST00000403076 HNRNPH2P55795 449 aaKnown RBP17.1■□□□□ 0.33
SDC1-203ENST00000403076 CLDN8P56748 225 aa17.1■□□□□ 0.33
SDC1-203ENST00000403076 UFM1P61960 85 aa17.1■□□□□ 0.33
SDC1-203ENST00000403076 MRM1Q6IN84 353 aaKnown RBP17.1■□□□□ 0.33
SDC1-203ENST00000403076 PAOXQ6QHF9 649 aa17.1■□□□□ 0.33
SDC1-203ENST00000403076 CPSF7Q8N684 471 aaKnown RBP17.1■□□□□ 0.33
SDC1-203ENST00000403076 PMEPA1Q969W9 287 aa17.1■□□□□ 0.33
SDC1-203ENST00000403076 FAIM2Q9BWQ8 316 aa17.1■□□□□ 0.33
SDC1-203ENST00000403076 ULBP3Q9BZM4 244 aa17.1■□□□□ 0.33
SDC1-203ENST00000403076 CLK4Q9HAZ1 481 aaKnown RBP17.1■□□□□ 0.33
SDC1-203ENST00000403076 ZNF304Q9HCX3 659 aa17.1■□□□□ 0.33
SDC1-203ENST00000403076 SDR39U1Q9NRG7 319 aaPredicted RBP17.1■□□□□ 0.33
SDC1-203ENST00000403076 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.1■□□□□ 0.33
SDC1-203ENST00000403076 ARMCX1Q9P291 453 aa17.1■□□□□ 0.33
SDC1-203ENST00000403076 DAPP1Q9UN19 280 aa17.1■□□□□ 0.33
SDC1-203ENST00000403076 WBP11Q9Y2W2 641 aaKnown RBP17.1■□□□□ 0.33
SDC1-203ENST00000403076 B3GALT1Q9Y5Z6 326 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms