RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CXCL17Q6UXB2 119 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 NUDT13Q86X67 352 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 FAM109AQ8N4B1 249 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 CNOT9Q92600 299 aaKnown RBP11.45□□□□□ -0.58
SYNPO-202ENST00000394243 NECAB3Q96P71 396 aaPredicted RBP11.45□□□□□ -0.58
SYNPO-202ENST00000394243 GPR83Q9NYM4 423 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 LYRM1O43325 122 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 RGS9O75916 674 aaPredicted RBP11.44□□□□□ -0.58
SYNPO-202ENST00000394243 CNTN5O94779 1100 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 CHRNB1P11230 501 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 KELP23276 732 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 GNRHRP30968 328 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 ACVR1BP36896 505 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 NRIP1P48552 1158 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 DNAJB13P59910 316 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 POTEKPQ9BYX7 375 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 MRPS30Q9NP92 439 aaKnown RBP11.44□□□□□ -0.58
SYNPO-202ENST00000394243 MAN2C1Q9NTJ4 1040 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 MRPS23Q9Y3D9 190 aaKnown RBP11.44□□□□□ -0.58
SYNPO-202ENST00000394243 ALDOBP05062 364 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 EDNRBP24530 442 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 ZNF630Q2M218 657 aaPredicted RBP11.44□□□□□ -0.58
SYNPO-202ENST00000394243 SPRED3Q2MJR0 410 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 FAM214AQ32MH5 1076 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 ALG10BQ5I7T1 473 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 GDPD1Q8N9F7 314 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 TMEM145Q8NBT3 493 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 LCN9Q8WX39 176 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 DDX1Q92499 740 aaKnown RBP11.44□□□□□ -0.58
SYNPO-202ENST00000394243 GATA6Q92908 595 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 RGMAQ96B86 450 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 CDKN2AIPNLQ96HQ2 116 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 PSKH2Q96QS6 385 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 FANCFQ9NPI8 374 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 BLOC1S5-TXNDC5H3BN57 136 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 AQP2P41181 271 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 IDH3GP51553 393 aaPredicted RBP11.44□□□□□ -0.58
SYNPO-202ENST00000394243 KLBQ86Z14 1044 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 GALNT13Q8IUC8 556 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 TMEM185AQ8NFB2 350 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 NSMAFQ92636 917 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 SH3YL1Q96HL8 342 aaPredicted RBP11.44□□□□□ -0.58
SYNPO-202ENST00000394243 TCEAL7Q9BRU2 100 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 DMAC2Q9NW81 257 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 PCDHB14Q9Y5E9 798 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 ADAMTS13Q76LX8 1427 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 PRKYO43930 277 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 WDPCPO95876 746 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 CFHP08603 1231 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 AKR1C4P17516 323 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 LMO2P25791 158 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 CCR8P51685 355 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 DAOAP59103 153 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 GRIN2CQ14957 1233 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 GPR157Q5UAW9 335 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 OR52E8Q6IFG1 317 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 GSG1LQ6UXU4 331 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 GID4Q8IVV7 300 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 TEX19Q8NA77 164 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 FANK1Q8TC84 345 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 PRDM9Q9NQV7 894 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 TEX10Q9NXF1 929 aaPredicted RBP11.44□□□□□ -0.58
SYNPO-202ENST00000394243 FAM198AQ9UFP1 575 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 UTS2RQ9UKP6 389 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 DNAJB1P25685 340 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 OR1D2P34982 312 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 OR8J3Q8NGG0 315 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 SMPDL3BQ92485 455 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 TRIB2Q92519 343 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 P2RY13Q9BPV8 354 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 FBRSQ9HAH7 460 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 PSAT1Q9Y617 370 aa11.44□□□□□ -0.58
SYNPO-202ENST00000394243 ZCCHC11Q5TAX3 1644 aaKnown RBP11.43□□□□□ -0.58
SYNPO-202ENST00000394243 A8MU76 341 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 IRF6O14896 467 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 BCAS1O75363 584 aaPredicted RBP11.43□□□□□ -0.58
SYNPO-202ENST00000394243 GNRH1P01148 92 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 IFNA5P01569 189 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 CYP17A1P05093 508 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 PROS1P07225 676 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 RHBDL3P58872 404 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 TMCO2Q7Z6W1 182 aaPredicted RBP11.43□□□□□ -0.58
SYNPO-202ENST00000394243 ZFP90Q8TF47 636 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 NRG4Q8WWG1 115 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 ZNF558Q96NG5 402 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 GLIS2Q9BZE0 524 aaPredicted RBP11.43□□□□□ -0.58
SYNPO-202ENST00000394243 MKS1Q9NXB0 559 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 COPS7AQ9UBW8 275 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 MYH15Q9Y2K3 1946 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 SPATA31A6Q5VVP1 1343 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 A0A0A6YYH2 397 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 PRSS51A0A1B0GVH4 220 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 A6NJ64 397 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 ZNF726A6NNF4 738 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 YJEFN3A6XGL0 299 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 CAPN14A8MX76 684 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 GPR25O00155 361 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 IFNA4P05014 189 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 LCKP06239 509 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 SPATA31D3P0C874 917 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms