RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 C1orf53Q5VUE5 145 aa13.68□□□□□ -0.22
CD48-201ENST00000368045 Q6ZPB1 254 aaPredicted RBP13.68□□□□□ -0.22
CD48-201ENST00000368045 WDR48Q8TAF3 677 aa13.68□□□□□ -0.22
CD48-201ENST00000368045 WFIKKN2Q8TEU8 576 aa13.68□□□□□ -0.22
CD48-201ENST00000368045 CYB5D2Q8WUJ1 264 aa13.68□□□□□ -0.22
CD48-201ENST00000368045 LINC00615Q96LM1 132 aaPredicted RBP13.68□□□□□ -0.22
CD48-201ENST00000368045 SAMD11Q96NU1 681 aa13.68□□□□□ -0.22
CD48-201ENST00000368045 YME1L1Q96TA2 773 aa13.68□□□□□ -0.22
CD48-201ENST00000368045 CDCA4Q9BXL8 241 aa13.68□□□□□ -0.22
CD48-201ENST00000368045 ACER3Q9NUN7 267 aa13.68□□□□□ -0.22
CD48-201ENST00000368045 GULP1Q9UBP9 304 aa13.68□□□□□ -0.22
CD48-201ENST00000368045 ITGB1BP2Q9UKP3 347 aa13.68□□□□□ -0.22
CD48-201ENST00000368045 PRAMEF25A6NGN4 478 aa13.67□□□□□ -0.22
CD48-201ENST00000368045 CACNB4O00305 520 aaPredicted RBP13.67□□□□□ -0.22
CD48-201ENST00000368045 PI15O43692 258 aa13.67□□□□□ -0.22
CD48-201ENST00000368045 TBX19O60806 448 aa13.67□□□□□ -0.22
CD48-201ENST00000368045 LILRB5O75023 590 aa13.67□□□□□ -0.22
CD48-201ENST00000368045 GADD45GO95257 159 aa13.67□□□□□ -0.22
CD48-201ENST00000368045 ADORA3P0DMS8 318 aa13.67□□□□□ -0.22
CD48-201ENST00000368045 ALDH9A1P49189 494 aa13.67□□□□□ -0.22
CD48-201ENST00000368045 TAS2R50P59544 299 aa13.67□□□□□ -0.22
CD48-201ENST00000368045 ZNF45Q02386 682 aa13.67□□□□□ -0.22
CD48-201ENST00000368045 TAP2Q03519 686 aa13.67□□□□□ -0.22
CD48-201ENST00000368045 PRKCDQ05655 676 aa13.67□□□□□ -0.22
CD48-201ENST00000368045 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.67□□□□□ -0.22
CD48-201ENST00000368045 TEAD2Q15562 447 aa13.67□□□□□ -0.22
CD48-201ENST00000368045 SLC5A12Q1EHB4 618 aa13.67□□□□□ -0.22
CD48-201ENST00000368045 MPEG1Q2M385 716 aa13.67□□□□□ -0.22
CD48-201ENST00000368045 TIMM50Q3ZCQ8 353 aa13.67□□□□□ -0.22
CD48-201ENST00000368045 PARS2Q7L3T8 475 aaKnown RBP13.67□□□□□ -0.22
CD48-201ENST00000368045 RNF130Q86XS8 419 aa13.67□□□□□ -0.22
CD48-201ENST00000368045 LRRC56Q8IYG6 542 aaPredicted RBP13.67□□□□□ -0.22
CD48-201ENST00000368045 CADM3Q8N126 398 aa13.67□□□□□ -0.22
CD48-201ENST00000368045 FAM129BQ96TA1 746 aa13.67□□□□□ -0.22
CD48-201ENST00000368045 NIPSNAP1Q9BPW8 284 aa13.67□□□□□ -0.22
CD48-201ENST00000368045 LINC00597Q9H2U6 94 aa13.67□□□□□ -0.22
CD48-201ENST00000368045 CCDC177Q9NQR7 707 aaPredicted RBP13.67□□□□□ -0.22
CD48-201ENST00000368045 RLIMQ9NVW2 624 aa13.67□□□□□ -0.22
CD48-201ENST00000368045 KCND3Q9UK17 655 aa13.67□□□□□ -0.22
CD48-201ENST00000368045 PNMA8BQ9ULN7 279 aaPredicted RBP13.67□□□□□ -0.22
CD48-201ENST00000368045 HELZP42694 1942 aaKnown RBP13.67□□□□□ -0.22
CD48-201ENST00000368045 LTBP2Q14767 1821 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 ZAR1LA6NP61 321 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 ZBBXA8MT70 800 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 SLC9A3R1O14745 358 aaPredicted RBP13.66□□□□□ -0.22
CD48-201ENST00000368045 AQP9O43315 295 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 MOSPD3O75425 235 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 KLHL18O94889 574 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 TGFB1P01137 390 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 IFNW1P05000 195 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 STSP08842 583 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 PTPN2P17706 415 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 TNFRSF1BP20333 461 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 OR1E2P47887 323 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 RGS6P49758 472 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 LIMK1P53667 647 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 DSTNP60981 165 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 ST3GAL4Q11206 333 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 STARD3Q14849 445 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 PNCKQ6P2M8 343 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 SLC44A2Q8IWA5 706 aaPredicted RBP13.66□□□□□ -0.22
CD48-201ENST00000368045 CFAP206Q8IYR0 622 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 KRT78Q8N1N4 520 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 OR52J3Q8NH60 311 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 UTP15Q8TED0 518 aaKnown RBP13.66□□□□□ -0.22
CD48-201ENST00000368045 CIDECQ96AQ7 238 aaPredicted RBP13.66□□□□□ -0.22
CD48-201ENST00000368045 TCEAL4Q96EI5 215 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 WRAP53Q9BUR4 548 aaKnown RBP13.66□□□□□ -0.22
CD48-201ENST00000368045 NLNQ9BYT8 704 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 OR51B5Q9H339 312 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 DPEP2Q9H4A9 486 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 ZBTB20Q9HC78 741 aaPredicted RBP13.66□□□□□ -0.22
CD48-201ENST00000368045 TMEM39AQ9NV64 488 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 HCFC1R1Q9NWW0 138 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 GPR83Q9NYM4 423 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 AHSPQ9NZD4 102 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 WDR37Q9Y2I8 494 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 MAP4K5Q9Y4K4 846 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 TRBC2A0A5B9 178 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 SEMA3DO95025 777 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 SOD1P00441 154 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 PIPP12273 146 aaPredicted RBP13.66□□□□□ -0.22
CD48-201ENST00000368045 SERPINB1P30740 379 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 GSSP48637 474 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 MC1RQ01726 317 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 KRR1Q13601 381 aaKnown RBP13.66□□□□□ -0.22
CD48-201ENST00000368045 INAVAQ3KP66 663 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 ARMCX4Q5H9R4 360 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 REEP3Q6NUK4 255 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 LCTLQ6UWM7 567 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 SLC22A16Q86VW1 577 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 LYSMD2Q8IV50 215 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 OR9Q2Q8NGE9 314 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 SORCS1Q8WY21 1168 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 MYLIPQ8WY64 445 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 PDXPQ96GD0 296 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 A4GALTQ9NPC4 353 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 CLN6Q9NWW5 311 aa13.66□□□□□ -0.22
CD48-201ENST00000368045 SCHIP1Q9P0W5 487 aaPredicted RBP13.66□□□□□ -0.22
CD48-201ENST00000368045 SPATA7Q9P0W8 599 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms