RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.24□□□□□ -1.41
UPF2-201ENST00000356352 C13orf42A0A1B0GVH6 325 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 UNC119BA6NIH7 251 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 EIF1AYO14602 144 aaKnown RBP6.24□□□□□ -1.41
UPF2-201ENST00000356352 PLD2O14939 933 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 TSPAN6O43657 245 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 RP2O75695 350 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 EPOP01588 193 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 H2BFMP0C1H6 154 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 ACTA2P62736 377 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 ACTG2P63267 376 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 FLYWCH1Q4VC44 716 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 SH3D19Q5HYK7 790 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 TRMT10BQ6PF06 316 aaKnown RBP6.24□□□□□ -1.41
UPF2-201ENST00000356352 ASPGQ86U10 573 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 KBTBD6Q86V97 674 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 MRPL41Q8IXM3 137 aaKnown RBP6.24□□□□□ -1.41
UPF2-201ENST00000356352 FAM156AQ8NDB6 213 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 OR8J3Q8NGG0 315 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 SLC22A8Q8TCC7 542 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 SMARCD2Q92925 531 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 MR1Q95460 341 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 PYCR2Q96C36 320 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 OR2M4Q96R27 311 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 C12orf65Q9H3J6 166 aaKnown RBP6.24□□□□□ -1.41
UPF2-201ENST00000356352 CCSER2Q9H7U1 834 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 FBRSQ9HAH7 460 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 COL20A1Q9P218 1284 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 RNF6Q9Y252 685 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 MRC1P22897 1456 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 LEFTY2O00292 366 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 SOX1O00570 391 aaPredicted RBP6.24□□□□□ -1.41
UPF2-201ENST00000356352 DUX1O43812 170 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 KCNJ13O60928 360 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 TMEM63AO94886 807 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 CLDN7O95471 211 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 C6orf47O95873 294 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 CD3GP09693 182 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 GLDCP23378 1020 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 GSK3BP49841 420 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 IST1P53990 364 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 ARHGAP1Q07960 439 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 GRIK2Q13002 908 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 FADDQ13158 208 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 SYPL2Q5VXT5 272 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 CDCA2Q69YH5 1023 aaPredicted RBP6.24□□□□□ -1.41
UPF2-201ENST00000356352 DUS1LQ6P1R4 473 aaKnown RBP6.24□□□□□ -1.41
UPF2-201ENST00000356352 TMEM139Q8IV31 216 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 LAS2Q8IYD9 372 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 C2CD4AQ8NCU7 369 aaPredicted RBP6.24□□□□□ -1.41
UPF2-201ENST00000356352 OR5L2Q8NGL0 311 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 THAP4Q8WY91 577 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 DAZLQ92904 295 aaKnown RBP6.24□□□□□ -1.41
UPF2-201ENST00000356352 HSPA12BQ96MM6 686 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 PHB2Q99623 299 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 STRA6Q9BX79 667 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 ZBTB26Q9HCK0 441 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 SIX2Q9NPC8 291 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 XPNPEP1Q9NQW7 623 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 KCNN3Q9UGI6 736 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 OR51F1A6NGY5 319 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 MAN2B1O00754 1011 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 TLX2O43763 284 aaPredicted RBP6.24□□□□□ -1.41
UPF2-201ENST00000356352 DNAJB6O75190 326 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 HBQ1P09105 142 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 HNRNPA1P09651 372 aaKnown RBP eCLIP6.24□□□□□ -1.41
UPF2-201ENST00000356352 IFNGR1P15260 489 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 AOC1P19801 751 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 CFL1P23528 166 aaKnown RBP6.24□□□□□ -1.41
UPF2-201ENST00000356352 EIF1AXP47813 144 aaKnown RBP6.24□□□□□ -1.41
UPF2-201ENST00000356352 KCNC1P48547 511 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 ACADVLP49748 655 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 FGL1Q08830 312 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 MADCAM1Q13477 382 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 GAS6Q14393 721 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 TEAD2Q15562 447 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 ATG9BQ674R7 924 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 SLC2A7Q6PXP3 512 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 UBE2Q1Q7Z7E8 422 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 CILP2Q8IUL8 1156 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 ZNF584Q8IVC4 421 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 Q8N9G6 341 aaPredicted RBP6.24□□□□□ -1.41
UPF2-201ENST00000356352 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.24□□□□□ -1.411e-10■■■■■ 30.6
UPF2-201ENST00000356352 OR52B2Q96RD2 323 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 WDR77Q9BQA1 342 aaPredicted RBP6.24□□□□□ -1.41
UPF2-201ENST00000356352 ACTR6Q9GZN1 396 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 ENAMQ9NRM1 1142 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 PIGVQ9NUD9 493 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 PPP4R1LQ9P1A2 415 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 ERVK-18Q9QC07 812 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 DHDHQ9UQ10 334 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 FARSAQ9Y285 508 aaKnown RBP6.24□□□□□ -1.41
UPF2-201ENST00000356352 ADAM18Q9Y3Q7 739 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 BACE2Q9Y5Z0 518 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 A0A1B0GVT2 93 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 A8MU76 341 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 ABCB7O75027 752 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 OXSR1O95747 527 aaPredicted RBP6.24□□□□□ -1.41
UPF2-201ENST00000356352 OPN1SWP03999 348 aa6.24□□□□□ -1.41
UPF2-201ENST00000356352 PRKCGP05129 697 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms