RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 PABPC4LP0CB38 370 aaKnown RBP2.21□□□□□ -2.06
VPS54-202ENST00000354504 CBSLP0DN79 551 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 PEPDP12955 493 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 MSH3P20585 1137 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 MALP21145 153 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 MYF6P23409 242 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 SHMT2P34897 504 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 CBSP35520 551 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 CETN2P41208 172 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 P2RY2P41231 377 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 ERVK-8P63133 956 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 KCNJ10P78508 379 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 TOP3AQ13472 1001 aaPredicted RBP2.21□□□□□ -2.06
VPS54-202ENST00000354504 PTGR1Q14914 329 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 PCOLCEQ15113 449 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 VPS26BQ4G0F5 336 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 CARD16Q5EG05 197 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 LRRC73Q5JTD7 316 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 LY6G5CQ5SRR4 150 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 TANGO2Q6ICL3 276 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 BORAQ6PGQ7 559 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 SLC2A7Q6PXP3 512 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 FAM90A1Q86YD7 464 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 SLC22A18ASQ8N1D0 253 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 PQLC1Q8N2U9 271 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 SYT8Q8NBV8 401 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 OR8J2Q8NGG1 315 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 OR4D11Q8NGI4 311 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 SUN3Q8TAQ9 357 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 LRTOMTQ8WZ04 291 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 FBXL8Q96CD0 374 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 MBD6Q96DN6 1003 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 TM4SF19Q96DZ7 209 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 DCUN1D1Q96GG9 259 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 C10orf90Q96M02 699 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 BTBD9Q96Q07 612 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 MYADMQ96S97 322 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 ZNF184Q99676 751 aaPredicted RBP2.21□□□□□ -2.06
VPS54-202ENST00000354504 CIPCQ9C0C6 399 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 WDR12Q9GZL7 423 aaKnown RBP2.21□□□□□ -2.06
VPS54-202ENST00000354504 NSRP1Q9H0G5 558 aaKnown RBP2.21□□□□□ -2.06
VPS54-202ENST00000354504 RSPH9Q9H1X1 276 aaPredicted RBP2.21□□□□□ -2.06
VPS54-202ENST00000354504 RHBGQ9H310 441 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 TTYH1Q9H313 450 aaPredicted RBP2.21□□□□□ -2.06
VPS54-202ENST00000354504 BRD9Q9H8M2 597 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 WDR41Q9HAD4 459 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 SMURF2Q9HAU4 748 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 CYP4F11Q9HBI6 524 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 FZD3Q9NPG1 666 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 PRSS16Q9NQE7 514 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 TM7SF3Q9NS93 570 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 NTMQ9P121 344 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 THAP10Q9P2Z0 257 aaPredicted RBP2.21□□□□□ -2.06
VPS54-202ENST00000354504 KCND3Q9UK17 655 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 ICKQ9UPZ9 632 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 MAGED1Q9Y5V3 778 aaPredicted RBP2.21□□□□□ -2.06
VPS54-202ENST00000354504 RP1P56715 2156 aa2.21□□□□□ -2.06
VPS54-202ENST00000354504 ZNF292O60281 2723 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 PRAMEF33A0A0G2JMD5 474 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 E7EQ34 232 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 SLCO1B7G3V0H7 640 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 PSMD11O00231 422 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ETV2O00321 342 aaPredicted RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 MANBAO00462 879 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 PRRG2O14669 202 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ARPC2O15144 300 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 SLC16A5O15375 505 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 HCRTR1O43613 425 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 PI15O43692 258 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 TPST2O60704 377 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 DNAJB6O75190 326 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 DNAJB5O75953 348 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ZFPL1O95159 310 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 RASAL1O95294 804 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 NPPAP01160 153 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 LMNAP02545 664 aaKnown RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 RHOCP08134 193 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 HNRNPA1P09651 372 aaKnown RBP eCLIP2.2□□□□□ -2.06
VPS54-202ENST00000354504 JUPP14923 745 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 UQCRBP14927 111 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ZNF28P17035 718 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 GPX2P18283 190 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 SLC7A1P30825 629 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 SLC5A2P31639 672 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 BSGP35613 385 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 PPM1AP35813 382 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 VHLP40337 213 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 SLC15A1P46059 708 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 PKNOX1P55347 436 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 SUMO3P55854 103 aaPredicted RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 SARNPP82979 210 aaKnown RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 GTF2H2Q13888 395 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 SHHQ15465 462 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 PDCD2Q16342 344 aaPredicted RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 CYP2A13Q16696 494 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 GSTA3Q16772 222 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 PFKFB4Q16877 469 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 MTX3Q5HYI7 312 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 CRB2Q5IJ48 1285 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 PLEKHS1Q5SXH7 462 aa2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms