RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 P3H2Q8IVL5 708 aa20.82■□□□□ 0.92
SHMT1-202ENST00000352886 KRT78Q8N1N4 520 aa20.82■□□□□ 0.92
SHMT1-202ENST00000352886 IPCEF1Q8WWN9 437 aaPredicted RBP20.82■□□□□ 0.92
SHMT1-202ENST00000352886 TFGQ92734 400 aaPredicted RBP20.82■□□□□ 0.92
SHMT1-202ENST00000352886 DNASE1L2Q92874 299 aa20.82■□□□□ 0.92
SHMT1-202ENST00000352886 FAIMQ9NVQ4 179 aa20.82■□□□□ 0.92
SHMT1-202ENST00000352886 TAAR2Q9P1P5 351 aa20.82■□□□□ 0.92
SHMT1-202ENST00000352886 SLC23A2Q9UGH3 650 aa20.82■□□□□ 0.92
SHMT1-202ENST00000352886 RNF6Q9Y252 685 aa20.82■□□□□ 0.92
SHMT1-202ENST00000352886 CFAP20Q9Y6A4 193 aaKnown RBP20.82■□□□□ 0.92
SHMT1-202ENST00000352886 ALDH4A1P30038 563 aa20.82■□□□□ 0.92
SHMT1-202ENST00000352886 P2RY2P41231 377 aa20.82■□□□□ 0.92
SHMT1-202ENST00000352886 MVKQ03426 396 aa20.82■□□□□ 0.92
SHMT1-202ENST00000352886 ELOAQ14241 798 aaKnown RBP20.82■□□□□ 0.92
SHMT1-202ENST00000352886 CYP2A13Q16696 494 aa20.82■□□□□ 0.92
SHMT1-202ENST00000352886 ZNF630Q2M218 657 aaPredicted RBP20.82■□□□□ 0.92
SHMT1-202ENST00000352886 IKBIPQ70UQ0 350 aa20.82■□□□□ 0.92
SHMT1-202ENST00000352886 CCDC80Q76M96 950 aa20.82■□□□□ 0.92
SHMT1-202ENST00000352886 AMZ2Q86W34 360 aa20.82■□□□□ 0.92
SHMT1-202ENST00000352886 DCUN1D3Q8IWE4 304 aa20.82■□□□□ 0.92
SHMT1-202ENST00000352886 OR4C15Q8NGM1 316 aa20.82■□□□□ 0.92
SHMT1-202ENST00000352886 BCL7BQ9BQE9 202 aa20.82■□□□□ 0.92
SHMT1-202ENST00000352886 TSC22D4Q9Y3Q8 395 aa20.82■□□□□ 0.92
SHMT1-202ENST00000352886 SLC22A1O15245 554 aa20.81■□□□□ 0.92
SHMT1-202ENST00000352886 OPRL1P41146 370 aa20.81■□□□□ 0.92
SHMT1-202ENST00000352886 MAGEA8P43361 318 aa20.81■□□□□ 0.92
SHMT1-202ENST00000352886 NR1D2Q14995 579 aa20.81■□□□□ 0.92
SHMT1-202ENST00000352886 HEATR4Q86WZ0 1026 aa20.81■□□□□ 0.92
SHMT1-202ENST00000352886 NDNFQ8TB73 568 aa20.81■□□□□ 0.92
SHMT1-202ENST00000352886 PALMDQ9NP74 551 aa20.81■□□□□ 0.92
SHMT1-202ENST00000352886 THSD1Q9NS62 852 aa20.81■□□□□ 0.92
SHMT1-202ENST00000352886 TAC3Q9UHF0 121 aa20.81■□□□□ 0.92
SHMT1-202ENST00000352886 SNX8Q9Y5X2 465 aa20.81■□□□□ 0.92
SHMT1-202ENST00000352886 ALPK3Q96L96 1907 aa20.81■□□□□ 0.92
SHMT1-202ENST00000352886 J3KTA2 159 aa20.8■□□□□ 0.92
SHMT1-202ENST00000352886 MRPS14O60783 128 aaKnown RBP20.8■□□□□ 0.92
SHMT1-202ENST00000352886 KRT75O95678 551 aa20.8■□□□□ 0.92
SHMT1-202ENST00000352886 CYP4F2P78329 520 aa20.8■□□□□ 0.92
SHMT1-202ENST00000352886 EXOC3L2Q2M3D2 409 aa20.8■□□□□ 0.92
SHMT1-202ENST00000352886 CRB2Q5IJ48 1285 aa20.8■□□□□ 0.92
SHMT1-202ENST00000352886 SLCO6A1Q86UG4 719 aa20.8■□□□□ 0.92
SHMT1-202ENST00000352886 LGI4Q8N135 537 aa20.8■□□□□ 0.92
SHMT1-202ENST00000352886 COX14Q96I36 57 aa20.8■□□□□ 0.92
SHMT1-202ENST00000352886 SH3GLB1Q9Y371 365 aa20.8■□□□□ 0.92
SHMT1-202ENST00000352886 CHD9Q3L8U1 2897 aa20.8■□□□□ 0.92
SHMT1-202ENST00000352886 TRPM6Q9BX84 2022 aa20.8■□□□□ 0.92
SHMT1-202ENST00000352886 PLPP1O14494 284 aa20.8■□□□□ 0.92
SHMT1-202ENST00000352886 ITGA2P17301 1181 aa20.8■□□□□ 0.92
SHMT1-202ENST00000352886 GGT2P36268 569 aa20.8■□□□□ 0.92
SHMT1-202ENST00000352886 VBP1P61758 197 aa20.8■□□□□ 0.92
SHMT1-202ENST00000352886 MICAQ29983 383 aa20.8■□□□□ 0.92
SHMT1-202ENST00000352886 C17orf64Q86WR6 236 aa20.8■□□□□ 0.92
SHMT1-202ENST00000352886 SUSD6Q92537 303 aa20.8■□□□□ 0.92
SHMT1-202ENST00000352886 SIGLEC11Q96RL6 698 aa20.8■□□□□ 0.92
SHMT1-202ENST00000352886 NIPSNAP1Q9BPW8 284 aa20.8■□□□□ 0.92
SHMT1-202ENST00000352886 NECTIN3Q9NQS3 549 aa20.8■□□□□ 0.92
SHMT1-202ENST00000352886 TM7SF3Q9NS93 570 aa20.8■□□□□ 0.92
SHMT1-202ENST00000352886 PRAMEF33A0A0G2JMD5 474 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 ANKDD1BA6NHY2 528 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 RTCAO00442 366 aaKnown RBP20.79■□□□□ 0.92
SHMT1-202ENST00000352886 PRAMEF10O60809 474 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 TBX6O95947 436 aaPredicted RBP20.79■□□□□ 0.92
SHMT1-202ENST00000352886 PCCBP05166 539 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 ARAFP10398 606 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 ANXA8P13928 327 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 ZNF12P17014 697 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 CNTN1Q12860 1018 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 GEMIN6Q8WXD5 167 aaKnown RBP20.79■□□□□ 0.92
SHMT1-202ENST00000352886 ASB16Q96NS5 453 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 DPP7Q9UHL4 492 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 RAB23Q9ULC3 237 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 ANGPT4Q9Y264 503 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 C2orf16Q68DN1 1984 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 NINQ8N4C6 2090 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 TBC1D3BA6NDS4 549 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 M0R3G1 203 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 TOR1BO14657 336 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 IFNA14P01570 189 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 LCKP06239 509 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 IL12RB1P42701 662 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 PCBP3P57721 371 aaKnown RBP20.79■□□□□ 0.92
SHMT1-202ENST00000352886 OCA2Q04671 838 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 RPA4Q13156 261 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 CACUL1Q86Y37 369 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 SNRNP27Q8WVK2 155 aaKnown RBP20.79■□□□□ 0.92
SHMT1-202ENST00000352886 SH3YL1Q96HL8 342 aaPredicted RBP20.79■□□□□ 0.92
SHMT1-202ENST00000352886 LGR4Q9BXB1 951 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 CXorf36Q9H7Y0 433 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 CUEDC1Q9NWM3 386 aaPredicted RBP20.79■□□□□ 0.92
SHMT1-202ENST00000352886 AHSPQ9NZD4 102 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 POFUT2Q9Y2G5 429 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 RWDD3Q9Y3V2 267 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 DOCK9Q9BZ29 2069 aa20.79■□□□□ 0.92
SHMT1-202ENST00000352886 C1QTNF3-AMACRE9PGA6 284 aa20.78■□□□□ 0.92
SHMT1-202ENST00000352886 EPHX1P07099 455 aa20.78■□□□□ 0.92
SHMT1-202ENST00000352886 MYOGP15173 224 aa20.78■□□□□ 0.92
SHMT1-202ENST00000352886 UQCRC2P22695 453 aa20.78■□□□□ 0.92
SHMT1-202ENST00000352886 DSTNP60981 165 aa20.78■□□□□ 0.92
SHMT1-202ENST00000352886 CSNK2BP67870 215 aa20.78■□□□□ 0.92
SHMT1-202ENST00000352886 KHDRBS2Q5VWX1 349 aaKnown RBP20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms