RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 SNX27Q96L92 541 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 BUD23O43709 281 aaKnown RBP17.07■□□□□ 0.32
SMAD4-201ENST00000342988 LANCL3Q6ZV70 420 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 CARM1Q86X55 608 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 C16orf78Q8WTQ4 265 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 RSPRY1Q96DX4 576 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 ZNF442Q9H7R0 627 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 PRKYO43930 277 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 NPPAP01160 153 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 H2BFMP0C1H6 154 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 CSNK2A2P19784 350 aaPredicted RBP17.07■□□□□ 0.32
SMAD4-201ENST00000342988 CDKN1CP49918 316 aaPredicted RBP17.07■□□□□ 0.32
SMAD4-201ENST00000342988 LACRTQ9GZZ8 138 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 COL20A1Q9P218 1284 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 SRRDQ9UH36 339 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 LRP5LA4QPB2 252 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 TPT1P13693 172 aaKnown RBP17.07■□□□□ 0.32
SMAD4-201ENST00000342988 RPL23AP62750 156 aaKnown RBP17.07■□□□□ 0.32
SMAD4-201ENST00000342988 CLEC6AQ6EIG7 209 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 LGI4Q8N135 537 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 CHST7Q9NS84 486 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 PREX2Q70Z35 1606 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 ADAMTS12P58397 1594 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 A6NLC8 198 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 LSSP48449 732 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 DSC3Q14574 896 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 ZNF695Q8IW36 515 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 NANPQ8TBE9 248 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 IL4I1Q96RQ9 567 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 ACTL8Q9H568 366 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.06■□□□□ 0.32
SMAD4-201ENST00000342988 SLC7A4O43246 635 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 HINT2Q9BX68 163 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 OR6C75A6NL08 312 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 ERVK-8P63133 956 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 ARHGAP19Q14CB8 494 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 TMEM214Q6NUQ4 689 aaKnown RBP17.06■□□□□ 0.32
SMAD4-201ENST00000342988 PCDHAC1Q9H158 963 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 SCN9AQ15858 1988 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 CSNK2A1P68400 391 aaPredicted RBP17.06■□□□□ 0.32
SMAD4-201ENST00000342988 KIAA1614Q5VZ46 1190 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 CSNK2A3Q8NEV1 391 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 TXNDC15Q96J42 360 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 FAM83CQ9BQN1 747 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 ZMAT5Q9UDW3 170 aaKnown RBP17.06■□□□□ 0.32
SMAD4-201ENST00000342988 B3GALT1Q9Y5Z6 326 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 PAPSS1O43252 624 aaPredicted RBP17.06■□□□□ 0.32
SMAD4-201ENST00000342988 EDF1O60869 148 aaKnown RBP17.06■□□□□ 0.32
SMAD4-201ENST00000342988 CD34P28906 385 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 CD6P30203 668 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 RPL35P42766 123 aaKnown RBP17.06■□□□□ 0.32
SMAD4-201ENST00000342988 PPA1Q15181 289 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 NBPF12Q5TAG4 269 aaPredicted RBP17.06■□□□□ 0.32
SMAD4-201ENST00000342988 ZSWIM9Q86XI8 627 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 HYLS1Q96M11 299 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 TMEM74Q96NL1 305 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 GBA2Q9HCG7 927 aaPredicted RBP17.06■□□□□ 0.32
SMAD4-201ENST00000342988 DUS2Q9NX74 493 aaKnown RBP17.06■□□□□ 0.32
SMAD4-201ENST00000342988 A0A1B0GVT2 93 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 CNTN2Q02246 1040 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 FOXR2Q6PJQ5 311 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 ASF1BQ9NVP2 202 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 NCDNQ9UBB6 729 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 ATG2BQ96BY7 2078 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 ODF4Q2M2E3 257 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 ZNF829Q3KNS6 432 aaPredicted RBP17.06■□□□□ 0.32
SMAD4-201ENST00000342988 ATPAF1Q5TC12 328 aaPredicted RBP17.06■□□□□ 0.32
SMAD4-201ENST00000342988 SMG8Q8ND04 991 aaKnown RBP17.06■□□□□ 0.32
SMAD4-201ENST00000342988 OR8K3Q8NH51 312 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 PORCNQ9H237 461 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 LRRC4CQ9HCJ2 640 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 SERTAD3Q9UJW9 196 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 NPFFR2Q9Y5X5 522 aa17.06■□□□□ 0.32
SMAD4-201ENST00000342988 NEO1Q92859 1461 aa17.05■□□□□ 0.32
SMAD4-201ENST00000342988 EPHX2P34913 555 aa17.05■□□□□ 0.32
SMAD4-201ENST00000342988 MRPS5P82675 430 aaKnown RBP17.05■□□□□ 0.32
SMAD4-201ENST00000342988 OR56A3Q8NH54 315 aa17.05■□□□□ 0.32
SMAD4-201ENST00000342988 PLEKHO2Q8TD55 490 aa17.05■□□□□ 0.32
SMAD4-201ENST00000342988 PLD4Q96BZ4 506 aa17.05■□□□□ 0.32
SMAD4-201ENST00000342988 SNX18Q96RF0 628 aa17.05■□□□□ 0.32
SMAD4-201ENST00000342988 VPS25Q9BRG1 176 aa17.05■□□□□ 0.32
SMAD4-201ENST00000342988 BEST1O76090 585 aa17.05■□□□□ 0.32
SMAD4-201ENST00000342988 ADORA2AP29274 412 aa17.05■□□□□ 0.32
SMAD4-201ENST00000342988 NR4A2P43354 598 aa17.05■□□□□ 0.32
SMAD4-201ENST00000342988 RPS14P62263 151 aaKnown RBP17.05■□□□□ 0.32
SMAD4-201ENST00000342988 RHDQ02161 417 aa17.05■□□□□ 0.32
SMAD4-201ENST00000342988 FSTL1Q12841 308 aa17.05■□□□□ 0.32
SMAD4-201ENST00000342988 TEX44Q53QW1 395 aa17.05■□□□□ 0.32
SMAD4-201ENST00000342988 PTBP2Q9UKA9 531 aaKnown RBP17.05■□□□□ 0.32
SMAD4-201ENST00000342988 LATO43561 262 aa17.05■□□□□ 0.32
SMAD4-201ENST00000342988 CHRNA4P43681 627 aa17.05■□□□□ 0.32
SMAD4-201ENST00000342988 MOGQ16653 247 aa17.05■□□□□ 0.32
SMAD4-201ENST00000342988 AMZ1Q400G9 498 aa17.05■□□□□ 0.32
SMAD4-201ENST00000342988 PRDM12Q9H4Q4 367 aa17.05■□□□□ 0.32
SMAD4-201ENST00000342988 UTS2RQ9UKP6 389 aa17.05■□□□□ 0.32
SMAD4-201ENST00000342988 TUSC3Q13454 348 aa17.05■□□□□ 0.32
SMAD4-201ENST00000342988 TAF1AQ15573 450 aaPredicted RBP17.05■□□□□ 0.32
SMAD4-201ENST00000342988 COMMD7Q86VX2 200 aa17.05■□□□□ 0.32
SMAD4-201ENST00000342988 A0A1W2PRB8 838 aa17.05■□□□□ 0.32
SMAD4-201ENST00000342988 DNAJB5O75953 348 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms