RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 CDK13Q14004 1512 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 A0A1B0GVT2 93 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 DHRS12A0PJE2 317 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 NCBP2LA6PVI3 153 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 ZNF99A8MXY4 864 aaPredicted RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 INMT-MINDY4F8WBC2 141 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 MEIS2O14770 477 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 RGL2O15211 777 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 INHAP05111 366 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 AMY2BP19961 511 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 KITLGP21583 273 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 BDNFP23560 247 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 EPHX2P34913 555 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 GLUD2P49448 558 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 SGCGQ13326 291 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 CCINQ13939 588 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 MRPL21Q7Z2W9 205 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 SLC26A11Q86WA9 606 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 FAM169BQ8N8A8 192 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 ZNF321PQ8N8H1 164 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 ZNF675Q8TD23 568 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 KCTD7Q96MP8 289 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 RBM4BQ9BQ04 359 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 CNTNAP3Q9BZ76 1288 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 PRO1933Q9H354 126 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 ZNF395Q9H8N7 513 aaPredicted RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 SEC61A2Q9H9S3 476 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 GNB4Q9HAV0 340 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 RAB18Q9NP72 206 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 TLR8Q9NR97 1041 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 ACOT9Q9Y305 439 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 AOX1Q06278 1338 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 SLC9B1P1A6NJY1 282 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 F8VP50 259 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 SLITRK3O94933 977 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 RPLP2P05387 115 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 TMEM253P0C7T8 217 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 ELK1P19419 428 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 PPT1P50897 306 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 GEMP55040 296 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 IRF8Q02556 426 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 SGCBQ16585 318 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 CNPY1Q3B7I2 92 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 TMEM220Q6QAJ8 160 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 ANKRD46Q86W74 232 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 ZMIZ2Q8NF64 920 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 BRIX1Q8TDN6 353 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 SELENOMQ8WWX9 145 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 ADAMTS14Q8WXS8 1223 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 RBM18Q96H35 190 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 TCF25Q9BQ70 676 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 PITHD1Q9GZP4 211 aaPredicted RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 CXorf21Q9HAI6 301 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 RNPEPL1Q9HAU8 725 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 ARNT2Q9HBZ2 717 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 ZNF355PQ9NSJ1 428 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 SACM1LQ9NTJ5 587 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 POMPQ9Y244 141 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 UGT2A1Q9Y4X1 527 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 RNF17Q9BXT8 1623 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 A0A0D9SFI3 127 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 NT5C1B-RDH14C9J2C7 533 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 RNASEK-C17orf49H0YIS7 233 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 TNFRSF10BO14763 440 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 ARPC5O15511 151 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 KERAO60938 352 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 ADAM23O75077 832 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 HSBP1O75506 76 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 BSGP35613 385 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 IKBKEQ14164 716 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 ZNF268Q14587 947 aaPredicted RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 UBXN2BQ14CS0 331 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 ZNF181Q2M3W8 571 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 KHDC1LQ5JSQ8 128 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 OR52E8Q6IFG1 317 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 SLC8B1Q6J4K2 584 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 BRICD5Q6PL45 260 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 VASH1Q7L8A9 365 aaPredicted RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 ZFAND4Q86XD8 727 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 PROKR2Q8NFJ6 384 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 STEAP2Q8NFT2 490 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 FAM110BQ8TC76 370 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 ASB11Q8WXH4 323 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 S100A16Q96FQ6 103 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 APOLD1Q96LR9 279 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 FAIM2Q9BWQ8 316 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 LRMDAQ9H2I8 198 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 SLC7A8Q9UHI5 535 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 C19orf53Q9UNZ5 99 aaPredicted RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 MRPL42Q9Y6G3 142 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 CLCA3PQ9Y6N3 262 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 CCDC141Q6ZP82 1450 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 TSPAN11A1L157 253 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 KLRF2D3W0D1 207 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 H0YIN7 160 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 PRMT5O14744 637 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 ZBTB7BO15156 539 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 LYZL6O75951 148 aa7.38□□□□□ -1.23
LIMCH1-201ENST00000313860 TP53P04637 393 aaPredicted RBP7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms