RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 ERI3O43414 337 aaKnown RBP13.4□□□□□ -0.26
CSPG4-201ENST00000308508 RNF13O43567 381 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 SIX3O95343 332 aaPredicted RBP13.4□□□□□ -0.26
CSPG4-201ENST00000308508 ADH7P40394 386 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 CLRN1P58418 232 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 NTRK2Q16620 822 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 PNCKQ6P2M8 343 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 SUN3Q8TAQ9 357 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 URM1Q9BTM9 101 aaKnown RBP13.4□□□□□ -0.26
CSPG4-201ENST00000308508 KCNJ13O60928 360 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 GPR157Q5UAW9 335 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 P4HA3Q7Z4N8 544 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 GOLGA7Q7Z5G4 137 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 ZC3HC1Q86WB0 502 aaKnown RBP13.4□□□□□ -0.26
CSPG4-201ENST00000308508 ERVK13-1Q9NX77 482 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 ACSL5Q9ULC5 683 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 PCDHB11Q9Y5F2 797 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 CPQQ9Y646 472 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 AIPO00170 330 aa13.4□□□□□ -0.27
CSPG4-201ENST00000308508 ZNF35P13682 527 aa13.4□□□□□ -0.27
CSPG4-201ENST00000308508 ITGB5P18084 799 aa13.4□□□□□ -0.27
CSPG4-201ENST00000308508 ACTBP60709 375 aa13.4□□□□□ -0.27
CSPG4-201ENST00000308508 ACTG1P63261 375 aa13.4□□□□□ -0.27
CSPG4-201ENST00000308508 PDSS1Q5T2R2 415 aa13.4□□□□□ -0.27
CSPG4-201ENST00000308508 C9orf131Q5VYM1 1079 aa13.4□□□□□ -0.27
CSPG4-201ENST00000308508 OR56B2PQ8NGI1 322 aa13.4□□□□□ -0.27
CSPG4-201ENST00000308508 OR56A3Q8NH54 315 aa13.4□□□□□ -0.27
CSPG4-201ENST00000308508 TSPEARQ8WU66 669 aa13.4□□□□□ -0.27
CSPG4-201ENST00000308508 TMEM74Q96NL1 305 aa13.4□□□□□ -0.27
CSPG4-201ENST00000308508 KLF15Q9UIH9 416 aa13.4□□□□□ -0.27
CSPG4-201ENST00000308508 PRSS51A0A1B0GVH4 220 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 TMEM233B4DJY2 109 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 G6PDP11413 515 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 HOXB9P17482 250 aaPredicted RBP13.39□□□□□ -0.27
CSPG4-201ENST00000308508 CHRNB2P17787 502 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 DNAJB13P59910 316 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 MBLAC2Q68D91 279 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 KCTD18Q6PI47 426 aaPredicted RBP13.39□□□□□ -0.27
CSPG4-201ENST00000308508 ABHD15Q6UXT9 468 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 OR51G2Q8NGK0 314 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 DERL2Q9GZP9 239 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 OR2AG1Q9H205 316 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 PLEKHA3Q9HB20 300 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 OR6C74A6NCV1 312 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 NEMP2A6NFY4 417 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 ST6GALNAC4Q9H4F1 302 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 ZNF696Q9H7X3 374 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 ZFR2Q9UPR6 939 aaKnown RBP13.39□□□□□ -0.27
CSPG4-201ENST00000308508 SLC22A14Q9Y267 594 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 ANKRD33BA6NCL7 494 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 ATG12O94817 140 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 ALPPL2P10696 532 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 PRKACGP22612 351 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 MLLT3P42568 568 aaPredicted RBP13.39□□□□□ -0.27
CSPG4-201ENST00000308508 ZNF41P51814 821 aaPredicted RBP13.39□□□□□ -0.27
CSPG4-201ENST00000308508 C6orf141Q5SZD1 244 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 C22orf42Q6IC83 251 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 RNF130Q86XS8 419 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 PROKR1Q8TCW9 393 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 NELL2Q99435 816 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 CCDC106Q9BWC9 280 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 FN3KQ9H479 309 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 GNG13Q9P2W3 67 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 ICKQ9UPZ9 632 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 TMEM63AO94886 807 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 MAP2K4P45985 399 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 EXOC3L2Q2M3D2 409 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 NAXEQ8NCW5 288 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 C2orf15Q8WU43 125 aaKnown RBP13.39□□□□□ -0.27
CSPG4-201ENST00000308508 FAAHO00519 579 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 WNT9AO14904 365 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 OR8U9P0C7N5 309 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 NDUFV1P49821 464 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 C1orf127Q8N9H9 656 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 BEST4Q8NFU0 473 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 CNIH3Q8TBE1 160 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 SLC45A3Q96JT2 553 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 BCL7BQ9BQE9 202 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 GOLGA2P5Q9HBQ8 144 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 SLC7A11Q9UPY5 501 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 C2orf74A8MZ97 194 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 DLX3O60479 287 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 IGFBP4P22692 258 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 RAB5CP51148 216 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 SP2Q02086 613 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 VGLL4Q14135 290 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 KCNJ11Q14654 390 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 THOC6Q86W42 341 aaKnown RBP13.39□□□□□ -0.27
CSPG4-201ENST00000308508 IL12RB2Q99665 862 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 MROQ9BYG7 248 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 RNF208Q9H0X6 261 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 KLRF1Q9NZS2 232 aa13.39□□□□□ -0.27
CSPG4-201ENST00000308508 A0A0J9YVX5 310 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 ZNF705FA8MVS1 300 aaPredicted RBP13.38□□□□□ -0.27
CSPG4-201ENST00000308508 M0R2N6 131 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 MANBAO00462 879 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 CCL16O15467 120 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 SLC34A2O95436 690 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 DIRAS3O95661 229 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 ZNF705DP0CH99 300 aaPredicted RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms