RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 KREMEN1Q96MU8 473 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 URM1Q9BTM9 101 aaKnown RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 CHIAQ9BZP6 476 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 RBFOX1Q9NWB1 397 aaKnown RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 ARAP2Q8WZ64 1704 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 A0A087WZY1 265 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 ATG13O75143 517 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 MTX2O75431 263 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 IGSF6O95976 241 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 ALDH7A1P49419 539 aaKnown RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 HSD11B2P80365 405 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 TRIM61Q5EBN2 209 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 GLT8D1Q68CQ7 371 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 GALNTL5Q7Z4T8 443 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 SLC47A2Q86VL8 602 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 SLC43A2Q8N370 569 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 FAM98AQ8NCA5 519 aaKnown RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 CHST4Q8NCG5 386 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 LRCH3Q96II8 777 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 PPM1MQ96MI6 270 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 COG8Q96MW5 612 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 VWA7Q9Y334 891 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 USP31Q70CQ4 1352 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 NFKBIEO00221 500 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 DVL1O14640 695 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 TRAF3IP2O43734 574 aaPredicted RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 GIPRP48546 466 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 DVL1P1P54792 670 aaPredicted RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 TAS2R39P59534 338 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 CDC20Q12834 499 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 TATDN3Q17R31 274 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 CD300LGQ6UXG3 332 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 G2E3Q7L622 706 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 SULF1Q8IWU6 871 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 RNF148Q8N7C7 305 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 TSTD1Q8NFU3 115 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 BRI3BPQ8WY22 251 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 PCDHAC1Q9H158 963 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 GAR1Q9NY12 217 aaKnown RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 DNMT3LQ9UJW3 386 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 TSC2P49815 1807 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 ABCC6O95255 1503 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 MEIOCA2RUB1 952 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 MAFO75444 373 aaPredicted RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 PDGFAP04085 211 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 OTUD1Q5VV17 481 aaPredicted RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 NLRP8Q86W28 1048 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 ADGRF4Q8IZF3 695 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 SLC35F5Q8WV83 523 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 FER1L4A9Z1Z3 1794 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 PLXNB2O15031 1838 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 TVP23AA6NH52 213 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 TAAR5O14804 337 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 DIRAS3O95661 229 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 GCP02774 474 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 TP53P04637 393 aaPredicted RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 IKBKEQ14164 716 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 EIF2B1Q14232 305 aaKnown RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 RBMS2Q15434 407 aaKnown RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 GOLGA7BQ2TAP0 167 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 PAN3Q58A45 887 aaKnown RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 ERCC6L2Q5T890 1561 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 C16orf86Q6ZW13 317 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 TMEM104Q8NE00 496 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 OR4F6Q8NGB9 312 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 OR1J1Q8NGS3 322 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 SEZ6LQ9BYH1 1024 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 PRDM12Q9H4Q4 367 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 BCO1Q9HAY6 547 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 ACP6Q9NPH0 428 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 PGAP2Q9UHJ9 254 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 TMEM94Q12767 1356 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 ZNF705GA8MUZ8 300 aaPredicted RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 PPP5D1E7EU14 171 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 BET1O15155 118 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 HCKP08631 526 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 EPORP19235 508 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 EVI2BP34910 448 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 CHRNA4P43681 627 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 ATXN1P54253 815 aaKnown RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 PRKCZQ05513 592 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 SETMARQ53H47 684 aaPredicted RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 DPF2Q92785 391 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 HDHD5Q9BXW7 423 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 CCM2LQ9NUG4 571 aaPredicted RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 SPIN1Q9Y657 262 aaPredicted RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 FRMPD3Q5JV73 1810 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 CHURC1-FNTBB4DL54 471 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 M0QYT0 321 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 BDKRB2P30411 391 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 CRISP3P54108 245 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 ERVK-25P63136 954 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 RASGRP4Q8TDF6 673 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 RNF157Q96PX1 679 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 WWTR1Q9GZV5 400 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 AIG1Q9NVV5 245 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 ERVK-18Q9QC07 812 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 MAGI3Q5TCQ9 1506 aa4.68□□□□□ -1.66
CSMD3-201ENST00000297405 SLC22A20A6NK97 555 aa4.68□□□□□ -1.66
CSMD3-201ENST00000297405 OR2AG2A6NM03 316 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms