RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 SH3GL1Q99961 368 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 ECSITQ9BQ95 431 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 ABCG4Q9H172 646 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 PRDM7Q9NQW5 492 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 ATAD3AQ9NVI7 634 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 ACTR3BQ9P1U1 418 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 ANGPTL2Q9UKU9 493 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 POMT2Q9UKY4 750 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 TCRBV3S1A0A5B6 114 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 TMEM221A6NGB7 291 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 M0R296 226 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 RNASET2O00584 256 aaKnown RBP16.05■□□□□ 0.16
CLN3-252ENST00000636907 ARPC2O15144 300 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 BAG2O95816 211 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 C8BP07358 591 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 GNSP15586 552 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 DDCP20711 480 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 HTR1EP28566 365 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 ARFIP1P53367 373 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 STXBP1P61764 594 aaKnown RBP16.05■□□□□ 0.16
CLN3-252ENST00000636907 BNIP3Q12983 259 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 BIRC2Q13490 618 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 FXNQ16595 210 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 PLK5Q496M5 336 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 C14orf28Q4W4Y0 310 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 LCN8Q6JVE9 175 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 TRIM40Q6P9F5 258 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 ZNF621Q6ZSS3 439 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 TMEM105Q8N8V8 129 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 KCT2Q8NC54 265 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 OR8K5Q8NH50 307 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 OR10A6Q8NH74 314 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 NT5CQ8TCD5 201 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 CIDECQ96AQ7 238 aaPredicted RBP16.05■□□□□ 0.16
CLN3-252ENST00000636907 TM4SF19Q96DZ7 209 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 LRGUKQ96M69 825 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 KCNC2Q96PR1 638 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 SLC38A3Q99624 504 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 MUC13Q9H3R2 512 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 KAT8Q9H7Z6 458 aaKnown RBP16.05■□□□□ 0.16
CLN3-252ENST00000636907 MIEF1Q9NQG6 463 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 TEX10Q9NXF1 929 aaPredicted RBP16.05■□□□□ 0.16
CLN3-252ENST00000636907 STOML1Q9UBI4 398 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 SNX13Q9Y5W8 968 aa16.05■□□□□ 0.16
CLN3-252ENST00000636907 TNRC6BQ9UPQ9 1833 aaKnown RBP16.04■□□□□ 0.16
CLN3-252ENST00000636907 LOC105369274A0A096LPK9 316 aa16.04■□□□□ 0.16
CLN3-252ENST00000636907 LOC102723532A0A0G2JNH3 316 aa16.04■□□□□ 0.16
CLN3-252ENST00000636907 LILRA5A6NI73 299 aa16.04■□□□□ 0.16
CLN3-252ENST00000636907 P2RX6O15547 441 aa16.04■□□□□ 0.16
CLN3-252ENST00000636907 HRO43593 1189 aa16.04■□□□□ 0.16
CLN3-252ENST00000636907 C1QCP02747 245 aa16.04■□□□□ 0.16
CLN3-252ENST00000636907 NCK1P16333 377 aa16.04■□□□□ 0.16
CLN3-252ENST00000636907 HIST1H1TP22492 207 aaPredicted RBP16.04■□□□□ 0.16
CLN3-252ENST00000636907 GSTM5P46439 218 aa16.04■□□□□ 0.16
CLN3-252ENST00000636907 PTDSS1P48651 473 aaKnown RBP16.04■□□□□ 0.16
CLN3-252ENST00000636907 RAB8AP61006 207 aa16.04■□□□□ 0.16
CLN3-252ENST00000636907 TRA2BP62995 288 aaKnown RBP16.04■□□□□ 0.16
CLN3-252ENST00000636907 RELAQ04206 551 aa16.04■□□□□ 0.16
CLN3-252ENST00000636907 RGS1Q08116 209 aa16.04■□□□□ 0.16
CLN3-252ENST00000636907 FRMPD2BQ6IN97 320 aa16.04■□□□□ 0.16
CLN3-252ENST00000636907 KLHL35Q6PF15 583 aa16.04■□□□□ 0.16
CLN3-252ENST00000636907 RNF44Q7L0R7 432 aa16.04■□□□□ 0.16
CLN3-252ENST00000636907 DGLUCYQ7Z3D6 616 aa16.04■□□□□ 0.16
CLN3-252ENST00000636907 OR4N4Q8N0Y3 316 aa16.04■□□□□ 0.16
CLN3-252ENST00000636907 C10orf111Q8N326 155 aa16.04■□□□□ 0.16
CLN3-252ENST00000636907 SLC25A45Q8N413 288 aa16.04■□□□□ 0.16
CLN3-252ENST00000636907 SRFBP1Q8NEF9 429 aaKnown RBP16.04■□□□□ 0.16
CLN3-252ENST00000636907 NRG4Q8WWG1 115 aa16.04■□□□□ 0.16
CLN3-252ENST00000636907 THAP11Q96EK4 314 aa16.04■□□□□ 0.16
CLN3-252ENST00000636907 ZFYVE21Q9BQ24 234 aa16.04■□□□□ 0.16
CLN3-252ENST00000636907 TBCDQ9BTW9 1192 aa16.04■□□□□ 0.16
CLN3-252ENST00000636907 LDHAL6BQ9BYZ2 381 aaPredicted RBP16.04■□□□□ 0.16
CLN3-252ENST00000636907 PILRBQ9UKJ0 227 aa16.04■□□□□ 0.16
CLN3-252ENST00000636907 AP3M1Q9Y2T2 418 aa16.04■□□□□ 0.16
CLN3-252ENST00000636907 PCDHB3Q9Y5E6 796 aa16.04■□□□□ 0.16
CLN3-252ENST00000636907 NVLO15381 856 aaKnown RBP16.03■□□□□ 0.16
CLN3-252ENST00000636907 SH3BP5O60239 455 aa16.03■□□□□ 0.16
CLN3-252ENST00000636907 GPR37L1O60883 481 aa16.03■□□□□ 0.16
CLN3-252ENST00000636907 PROS1P07225 676 aa16.03■□□□□ 0.16
CLN3-252ENST00000636907 SLC35G6P0C7Q6 338 aa16.03■□□□□ 0.16
CLN3-252ENST00000636907 ATP5A1P25705 553 aaKnown RBP16.03■□□□□ 0.16
CLN3-252ENST00000636907 CERS1P27544 350 aa16.03■□□□□ 0.16
CLN3-252ENST00000636907 CAPZBP47756 277 aa16.03■□□□□ 0.16
CLN3-252ENST00000636907 RHDQ02161 417 aa16.03■□□□□ 0.16
CLN3-252ENST00000636907 LRRC74AQ0VAA2 488 aa16.03■□□□□ 0.16
CLN3-252ENST00000636907 SLC14A1Q13336 389 aa16.03■□□□□ 0.16
CLN3-252ENST00000636907 SIM2Q14190 667 aaPredicted RBP16.03■□□□□ 0.16
CLN3-252ENST00000636907 HEPACAMQ14CZ8 416 aa16.03■□□□□ 0.16
CLN3-252ENST00000636907 SHBQ15464 509 aa16.03■□□□□ 0.16
CLN3-252ENST00000636907 ZFP1Q6P2D0 407 aa16.03■□□□□ 0.16
CLN3-252ENST00000636907 SPPL2CQ8IUH8 684 aa16.03■□□□□ 0.16
CLN3-252ENST00000636907 ACOT4Q8N9L9 421 aa16.03■□□□□ 0.16
CLN3-252ENST00000636907 FAM47BQ8NA70 645 aa16.03■□□□□ 0.16
CLN3-252ENST00000636907 OR4A15Q8NGL6 344 aa16.03■□□□□ 0.16
CLN3-252ENST00000636907 GAL3ST3Q96A11 431 aa16.03■□□□□ 0.16
CLN3-252ENST00000636907 PHF12Q96QT6 1004 aa16.03■□□□□ 0.16
CLN3-252ENST00000636907 ELF4Q99607 663 aaPredicted RBP16.03■□□□□ 0.16
CLN3-252ENST00000636907 TRIM15Q9C019 465 aa16.03■□□□□ 0.16
CLN3-252ENST00000636907 SEMA6CQ9H3T2 930 aa16.03■□□□□ 0.16
CLN3-252ENST00000636907 TMEM131Q92545 1883 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms