RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 NPAS2Q99743 824 aa11.16□□□□□ -0.62
UPF3B-204ENST00000619445 ROGDIQ9GZN7 287 aa11.16□□□□□ -0.62
UPF3B-204ENST00000619445 DERL2Q9GZP9 239 aa11.16□□□□□ -0.62
UPF3B-204ENST00000619445 PLAC1Q9HBJ0 212 aa11.16□□□□□ -0.62
UPF3B-204ENST00000619445 ANKRD10Q9NXR5 420 aa11.16□□□□□ -0.62
UPF3B-204ENST00000619445 NPIPA1Q9UND3 350 aa11.16□□□□□ -0.62
UPF3B-204ENST00000619445 PPIEQ9UNP9 301 aaKnown RBP11.16□□□□□ -0.62
UPF3B-204ENST00000619445 CCDC168Q8NDH2 2452 aa11.15□□□□□ -0.62
UPF3B-204ENST00000619445 NPEPPSL1A6NEC2 478 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 ANKDD1BA6NHY2 528 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 EFCAB8A8MWE9 144 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 E9PLN8 166 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 CDC7O00311 574 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 CLGNO14967 610 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 WDR47O94967 919 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 CLDN14O95500 239 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 TFEBP19484 476 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 TPP2P29144 1249 aaPredicted RBP11.15□□□□□ -0.63
UPF3B-204ENST00000619445 HNF4AP41235 474 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 SLC6A12P48065 614 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 TAS2R39P59534 338 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 ATP6V0D1P61421 351 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 OLR1P78380 273 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 HYAL2Q12891 473 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 CALCOCO2Q13137 446 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 LAPTM5Q13571 262 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 EFTUD2Q15029 972 aaKnown RBP eCLIP11.15□□□□□ -0.631e-7■■■■□ 23.5
UPF3B-204ENST00000619445 C3AR1Q16581 482 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 PAGE2BQ5JRK9 111 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 TOR1AIP1Q5JTV8 583 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 HP1BP3Q5SSJ5 553 aaPredicted RBP11.15□□□□□ -0.63
UPF3B-204ENST00000619445 TRIM40Q6P9F5 258 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 SLCO4C1Q6ZQN7 724 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 CYS1Q717R9 158 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.15□□□□□ -0.63
UPF3B-204ENST00000619445 CREG2Q8IUH2 290 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 SPNS2Q8IVW8 549 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 SIAH3Q8IW03 269 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 KLHL7Q8IXQ5 586 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 SRRM1Q8IYB3 904 aaKnown RBP11.15□□□□□ -0.63
UPF3B-204ENST00000619445 CA13Q8N1Q1 262 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 TMEM156Q8N614 296 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 FBXO36Q8NEA4 188 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 SRFBP1Q8NEF9 429 aaKnown RBP11.15□□□□□ -0.63
UPF3B-204ENST00000619445 NFAM1Q8NET5 270 aaPredicted RBP11.15□□□□□ -0.63
UPF3B-204ENST00000619445 CREB3L4Q8TEY5 395 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 KIAA1191Q96A73 305 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 RHBDF1Q96CC6 855 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 NAPGQ99747 312 aaPredicted RBP11.15□□□□□ -0.63
UPF3B-204ENST00000619445 VKORC1Q9BQB6 163 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 UNKQ9C0B0 810 aaKnown RBP11.15□□□□□ -0.63
UPF3B-204ENST00000619445 RYDENQ9NUL5 291 aaKnown RBP11.15□□□□□ -0.63
UPF3B-204ENST00000619445 TRMT1Q9NXH9 659 aaKnown RBP11.15□□□□□ -0.63
UPF3B-204ENST00000619445 SLC17A6Q9P2U8 582 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 SH3BGRL2Q9UJC5 107 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 MEMO1Q9Y316 297 aa11.15□□□□□ -0.63
UPF3B-204ENST00000619445 LRIT2A6NDA9 550 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 TFECO14948 347 aaPredicted RBP11.14□□□□□ -0.63
UPF3B-204ENST00000619445 EIF3HO15372 352 aaKnown RBP eCLIP11.14□□□□□ -0.63
UPF3B-204ENST00000619445 MAOAP21397 527 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 GGT5P36269 586 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 RAB38P57729 211 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 GNG11P61952 73 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 BTN3A2P78410 334 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 BTG2P78543 158 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 TGFBIQ15582 683 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 TSNQ15631 228 aaKnown RBP11.14□□□□□ -0.63
UPF3B-204ENST00000619445 HIST2H2ACQ16777 129 aaPredicted RBP11.14□□□□□ -0.63
UPF3B-204ENST00000619445 HIST2H2AA3Q6FI13 130 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 SULT1C3Q6IMI6 304 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 PAOXQ6QHF9 649 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 MAATS1Q7Z4T9 603 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 ANKMY2Q8IV38 441 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 SCUBE1Q8IWY4 988 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 CYP4Z2PQ8N1L4 340 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 TMEM132CQ8N3T6 1108 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 OR2L5Q8NG80 312 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 PYROXD1Q8WU10 500 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 ANP32BQ92688 251 aaKnown RBP11.14□□□□□ -0.63
UPF3B-204ENST00000619445 DAZLQ92904 295 aaKnown RBP11.14□□□□□ -0.63
UPF3B-204ENST00000619445 UBE2E3Q969T4 207 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 CAPZA3Q96KX2 299 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 SERINC2Q96SA4 455 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 TRIM51Q9BSJ1 452 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 EFCAB11Q9BUY7 163 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 HES7Q9BYE0 225 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 SPNS1Q9H2V7 528 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 RHBGQ9H310 441 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 COPS7BQ9H9Q2 264 aaPredicted RBP11.14□□□□□ -0.63
UPF3B-204ENST00000619445 ADAP2Q9NPF8 381 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 TIMMDC1Q9NPL8 285 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 PRTFDC1Q9NRG1 225 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 DNAJC11Q9NVH1 559 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 WWOXQ9NZC7 414 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 COQ3Q9NZJ6 369 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 TINAGQ9UJW2 476 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 YARS2Q9Y2Z4 477 aaKnown RBP11.14□□□□□ -0.63
UPF3B-204ENST00000619445 PSAT1Q9Y617 370 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 SPACA6W5XKT8 324 aa11.14□□□□□ -0.63
UPF3B-204ENST00000619445 POLQO75417 2590 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms