RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 C1QTNF9P0C862 333 aa18.68■□□□□ 0.58
UPF3A-211ENST00000618700 STAT5AP42229 794 aa18.68■□□□□ 0.58
UPF3A-211ENST00000618700 OR1D4P47884 311 aa18.68■□□□□ 0.58
UPF3A-211ENST00000618700 AVPR1BP47901 424 aa18.68■□□□□ 0.58
UPF3A-211ENST00000618700 RPL14P50914 215 aaKnown RBP18.68■□□□□ 0.58
UPF3A-211ENST00000618700 PCBP4P57723 403 aaKnown RBP18.68■□□□□ 0.58
UPF3A-211ENST00000618700 DCDP81605 110 aaKnown RBP18.68■□□□□ 0.58
UPF3A-211ENST00000618700 TBL3Q12788 808 aaKnown RBP18.68■□□□□ 0.58
UPF3A-211ENST00000618700 NIPAL1Q6NVV3 410 aa18.68■□□□□ 0.58
UPF3A-211ENST00000618700 FAM198BQ6UWH4 519 aa18.68■□□□□ 0.58
UPF3A-211ENST00000618700 ZNF793Q6ZN11 406 aa18.68■□□□□ 0.58
UPF3A-211ENST00000618700 FGF11Q92914 225 aa18.68■□□□□ 0.58
UPF3A-211ENST00000618700 RGMAQ96B86 450 aa18.68■□□□□ 0.58
UPF3A-211ENST00000618700 MMABQ96EY8 250 aaPredicted RBP18.68■□□□□ 0.58
UPF3A-211ENST00000618700 C7orf26Q96N11 449 aa18.68■□□□□ 0.58
UPF3A-211ENST00000618700 CENPKQ9BS16 269 aa18.68■□□□□ 0.58
UPF3A-211ENST00000618700 TBCDQ9BTW9 1192 aa18.68■□□□□ 0.58
UPF3A-211ENST00000618700 ZNF304Q9HCX3 659 aa18.68■□□□□ 0.58
UPF3A-211ENST00000618700 PRM3Q9NNZ6 103 aa18.68■□□□□ 0.58
UPF3A-211ENST00000618700 PRDM7Q9NQW5 492 aa18.68■□□□□ 0.58
UPF3A-211ENST00000618700 NPDC1Q9NQX5 325 aaPredicted RBP18.68■□□□□ 0.58
UPF3A-211ENST00000618700 PADI1Q9ULC6 663 aa18.68■□□□□ 0.58
UPF3A-211ENST00000618700 SLC12A4Q9UP95 1085 aa18.68■□□□□ 0.58
UPF3A-211ENST00000618700 MAU2Q9Y6X3 613 aa18.68■□□□□ 0.58
UPF3A-211ENST00000618700 APC2O95996 2303 aa18.68■□□□□ 0.58
UPF3A-211ENST00000618700 CHD8Q9HCK8 2581 aa18.68■□□□□ 0.58
UPF3A-211ENST00000618700 IGF2RP11717 2491 aa18.67■□□□□ 0.58
UPF3A-211ENST00000618700 A0A0G2JN53 185 aa18.67■□□□□ 0.58
UPF3A-211ENST00000618700 NPIPB8E9PQR5 432 aa18.67■□□□□ 0.58
UPF3A-211ENST00000618700 SGK494L7N484 410 aa18.67■□□□□ 0.58
UPF3A-211ENST00000618700 RTCAO00442 366 aaKnown RBP18.67■□□□□ 0.58
UPF3A-211ENST00000618700 PIP5K1BO14986 540 aa18.67■□□□□ 0.58
UPF3A-211ENST00000618700 RDH16O75452 317 aa18.67■□□□□ 0.58
UPF3A-211ENST00000618700 TSFMP43897 325 aaKnown RBP18.67■□□□□ 0.58
UPF3A-211ENST00000618700 RAP1GDS1P52306 607 aa18.67■□□□□ 0.58
UPF3A-211ENST00000618700 SKP1P63208 163 aa18.67■□□□□ 0.58
UPF3A-211ENST00000618700 BTN3A2P78410 334 aa18.67■□□□□ 0.58
UPF3A-211ENST00000618700 HMGCS1Q01581 520 aa18.67■□□□□ 0.58
UPF3A-211ENST00000618700 TGM3Q08188 693 aa18.67■□□□□ 0.58
UPF3A-211ENST00000618700 XKR7Q5GH72 579 aa18.67■□□□□ 0.58
UPF3A-211ENST00000618700 CACNA2D3Q8IZS8 1091 aa18.67■□□□□ 0.58
UPF3A-211ENST00000618700 MR1Q95460 341 aa18.67■□□□□ 0.58
UPF3A-211ENST00000618700 NKD1Q969G9 470 aa18.67■□□□□ 0.58
UPF3A-211ENST00000618700 FKBP10Q96AY3 582 aa18.67■□□□□ 0.58
UPF3A-211ENST00000618700 MRPL1Q9BYD6 325 aaKnown RBP18.67■□□□□ 0.58
UPF3A-211ENST00000618700 ROGDIQ9GZN7 287 aa18.67■□□□□ 0.58
UPF3A-211ENST00000618700 CHST8Q9H2A9 424 aa18.67■□□□□ 0.58
UPF3A-211ENST00000618700 SLCO1B3Q9NPD5 702 aa18.67■□□□□ 0.58
UPF3A-211ENST00000618700 VPS29Q9UBQ0 182 aa18.67■□□□□ 0.58
UPF3A-211ENST00000618700 A0A088AWK7 358 aa18.66■□□□□ 0.58
UPF3A-211ENST00000618700 ZNF860A6NHJ4 632 aa18.66■□□□□ 0.58
UPF3A-211ENST00000618700 TERTO14746 1132 aaKnown RBP18.66■□□□□ 0.58
UPF3A-211ENST00000618700 RSL1D1O76021 490 aaKnown RBP18.66■□□□□ 0.58
UPF3A-211ENST00000618700 JUNP05412 331 aaKnown RBP18.66■□□□□ 0.58
UPF3A-211ENST00000618700 CCNYL3P0C7X3 344 aa18.66■□□□□ 0.58
UPF3A-211ENST00000618700 ZNF10P21506 573 aaPredicted RBP18.66■□□□□ 0.58
UPF3A-211ENST00000618700 AGXTP21549 392 aa18.66■□□□□ 0.58
UPF3A-211ENST00000618700 FBLP22087 321 aaKnown RBP18.66■□□□□ 0.58
UPF3A-211ENST00000618700 HIST1H1TP22492 207 aaPredicted RBP18.66■□□□□ 0.58
UPF3A-211ENST00000618700 ATP5A1P25705 553 aaKnown RBP18.66■□□□□ 0.58
UPF3A-211ENST00000618700 BSGP35613 385 aa18.66■□□□□ 0.58
UPF3A-211ENST00000618700 SSR2P43308 183 aa18.66■□□□□ 0.58
UPF3A-211ENST00000618700 SLC9A5Q14940 896 aa18.66■□□□□ 0.58
UPF3A-211ENST00000618700 ARHGAP40Q5TG30 622 aa18.66■□□□□ 0.58
UPF3A-211ENST00000618700 OR4C11Q6IEV9 310 aa18.66■□□□□ 0.58
UPF3A-211ENST00000618700 FAM199XQ6PEV8 388 aaPredicted RBP18.66■□□□□ 0.58
UPF3A-211ENST00000618700 METTL4Q8N3J2 472 aa18.66■□□□□ 0.58
UPF3A-211ENST00000618700 OR2T11Q8NH01 316 aa18.66■□□□□ 0.58
UPF3A-211ENST00000618700 CT55Q8WUE5 264 aa18.66■□□□□ 0.58
UPF3A-211ENST00000618700 FAR2Q96K12 515 aa18.66■□□□□ 0.58
UPF3A-211ENST00000618700 SERINC2Q96SA4 455 aa18.66■□□□□ 0.58
UPF3A-211ENST00000618700 CCT7Q99832 543 aa18.66■□□□□ 0.58
UPF3A-211ENST00000618700 CCDC134Q9H6E4 229 aa18.66■□□□□ 0.58
UPF3A-211ENST00000618700 CLK4Q9HAZ1 481 aaKnown RBP18.66■□□□□ 0.58
UPF3A-211ENST00000618700 PNPOQ9NVS9 261 aa18.66■□□□□ 0.58
UPF3A-211ENST00000618700 NMRK1Q9NWW6 199 aa18.66■□□□□ 0.58
UPF3A-211ENST00000618700 FAM53CQ9NYF3 392 aa18.66■□□□□ 0.58
UPF3A-211ENST00000618700 IGLV3-12A0A075B6K2 115 aa18.65■□□□□ 0.58
UPF3A-211ENST00000618700 SLC28A1O00337 649 aa18.65■□□□□ 0.58
UPF3A-211ENST00000618700 SKAP2O75563 359 aaPredicted RBP18.65■□□□□ 0.58
UPF3A-211ENST00000618700 LINC00032P0C843 101 aa18.65■□□□□ 0.58
UPF3A-211ENST00000618700 PIM1P11309 404 aaPredicted RBP18.65■□□□□ 0.58
UPF3A-211ENST00000618700 PRPH2P23942 346 aa18.65■□□□□ 0.58
UPF3A-211ENST00000618700 CERS1P27544 350 aa18.65■□□□□ 0.58
UPF3A-211ENST00000618700 MTTPP55157 894 aa18.65■□□□□ 0.58
UPF3A-211ENST00000618700 MAT1AQ00266 395 aaKnown RBP18.65■□□□□ 0.58
UPF3A-211ENST00000618700 GUCY1A3Q02108 690 aa18.65■□□□□ 0.58
UPF3A-211ENST00000618700 CLN3Q13286 438 aa18.65■□□□□ 0.58
UPF3A-211ENST00000618700 TGIF1Q15583 401 aa18.65■□□□□ 0.58
UPF3A-211ENST00000618700 IMPG1Q17R60 797 aa18.65■□□□□ 0.58
UPF3A-211ENST00000618700 Q6ZSR9 355 aa18.65■□□□□ 0.58
UPF3A-211ENST00000618700 OVCH1Q7RTY7 1134 aa18.65■□□□□ 0.58
UPF3A-211ENST00000618700 COMMD6Q7Z4G1 85 aa18.65■□□□□ 0.58
UPF3A-211ENST00000618700 OR5T3Q8NGG3 340 aa18.65■□□□□ 0.58
UPF3A-211ENST00000618700 CHTF18Q8WVB6 975 aa18.65■□□□□ 0.58
UPF3A-211ENST00000618700 C19orf60Q96EN9 201 aa18.65■□□□□ 0.58
UPF3A-211ENST00000618700 C11orf24Q96F05 449 aaPredicted RBP18.65■□□□□ 0.58
UPF3A-211ENST00000618700 SORBS1Q9BX66 1292 aaKnown RBP18.65■□□□□ 0.58
UPF3A-211ENST00000618700 NPLQ9BXD5 320 aaPredicted RBP18.65■□□□□ 0.58
UPF3A-211ENST00000618700 SLC26A1Q9H2B4 701 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms