RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 OR2W6PQ8NHA6 318 aa15.89■□□□□ 0.13
TRIM28-215ENST00000601150 ATP6V1E2Q96A05 226 aa15.89■□□□□ 0.13
TRIM28-215ENST00000601150 CMTM7Q96FZ5 175 aa15.89■□□□□ 0.13
TRIM28-215ENST00000601150 NSUN5Q96P11 429 aaKnown RBP15.89■□□□□ 0.13
TRIM28-215ENST00000601150 F2RL3Q96RI0 385 aa15.89■□□□□ 0.13
TRIM28-215ENST00000601150 SERINC2Q96SA4 455 aa15.89■□□□□ 0.13
TRIM28-215ENST00000601150 C1QTNF3Q9BXJ4 246 aa15.89■□□□□ 0.13
TRIM28-215ENST00000601150 ZNF700Q9H0M5 742 aa15.89■□□□□ 0.13
TRIM28-215ENST00000601150 COPS7BQ9H9Q2 264 aaPredicted RBP15.89■□□□□ 0.13
TRIM28-215ENST00000601150 ZNF160Q9HCG1 818 aa15.89■□□□□ 0.13
TRIM28-215ENST00000601150 C19orf25Q9UFG5 118 aaPredicted RBP15.89■□□□□ 0.13
TRIM28-215ENST00000601150 RNF11Q9Y3C5 154 aa15.89■□□□□ 0.13
TRIM28-215ENST00000601150 TSC22D4Q9Y3Q8 395 aa15.89■□□□□ 0.13
TRIM28-215ENST00000601150 TLDC2A0PJX2 215 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 H0YIV9 168 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 B3GALT2O43825 422 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 CDC123O75794 336 aaPredicted RBP15.88■□□□□ 0.13
TRIM28-215ENST00000601150 TGFB1P01137 390 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 ALPPP05187 535 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 TUBBP07437 444 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 ATP5F1P24539 256 aaPredicted RBP15.88■□□□□ 0.13
TRIM28-215ENST00000601150 PIK3CBP42338 1070 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 HERVK_113P63132 956 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 PHEXP78562 749 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 RHAGQ02094 409 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 IFFO1Q0D2I5 559 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 RAPSNQ13702 412 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 DDX39BQ13838 428 aaKnown RBP15.88■□□□□ 0.13
TRIM28-215ENST00000601150 CPSF6Q16630 551 aaKnown RBP eCLIP15.88■□□□□ 0.13
TRIM28-215ENST00000601150 VWA5B1Q5TIE3 1220 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 IRAK1BP1Q5VVH5 260 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 SH2D5Q6ZV89 423 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 CHSY3Q70JA7 882 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 HPS6Q86YV9 775 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 PARP9Q8IXQ6 854 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 CA13Q8N1Q1 262 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 PLPP5Q8NEB5 264 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 OR52B6Q8NGF0 335 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 HUS1BQ8NHY5 278 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 ZNF483Q8TF39 744 aaPredicted RBP15.88■□□□□ 0.13
TRIM28-215ENST00000601150 KCNC2Q96PR1 638 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 SMAD5Q99717 465 aaKnown RBP15.88■□□□□ 0.13
TRIM28-215ENST00000601150 TBCDQ9BTW9 1192 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 NTMT1Q9BV86 223 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 ERVK-6Q9BXR3 956 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 ROGDIQ9GZN7 287 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 ZBTB26Q9HCK0 441 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 SEMA4BQ9NPR2 832 aaPredicted RBP15.88■□□□□ 0.13
TRIM28-215ENST00000601150 RIC8BQ9NVN3 520 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 RAB21Q9UL25 225 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 BOD1L1Q8NFC6 3051 aa15.88■□□□□ 0.13
TRIM28-215ENST00000601150 OR2W5A6NFC9 320 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 MAGEB17A8MXT2 336 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 DLX3O60479 287 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 B4GALT2O60909 372 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 CCT5P48643 541 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 MTTPP55157 894 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 Q0VFX4 171 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 KLRB1Q12918 225 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 TRAF3Q13114 568 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 RUNX2Q13950 521 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 ABRAXAS2Q15018 415 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 PCOLCEQ15113 449 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 ZRSR2Q15696 482 aaKnown RBP15.87■□□□□ 0.13
TRIM28-215ENST00000601150 NSDHLQ15738 373 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 KHDRBS2Q5VWX1 349 aaKnown RBP15.87■□□□□ 0.13
TRIM28-215ENST00000601150 LANCL3Q6ZV70 420 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 CPEB2Q7Z5Q1 589 aaKnown RBP15.87■□□□□ 0.13
TRIM28-215ENST00000601150 ANKRD37Q7Z713 158 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 ZNF605Q86T29 641 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 SLC22A9Q8IVM8 553 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 KBTBD2Q8IY47 623 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 MREGQ8N565 214 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 PPP4R1Q8TF05 950 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 MAGEB10Q96LZ2 347 aaPredicted RBP15.87■□□□□ 0.13
TRIM28-215ENST00000601150 CDK15Q96Q40 435 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 MTERF1Q99551 399 aaKnown RBP15.87■□□□□ 0.13
TRIM28-215ENST00000601150 LHPPQ9H008 270 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 DMRT3Q9NQL9 472 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 PRDM7Q9NQW5 492 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 C5AR2Q9P296 337 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 ANAPC2Q9UJX6 822 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 EMCNQ9ULC0 261 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 GRID1Q9ULK0 1009 aa15.87■□□□□ 0.13
TRIM28-215ENST00000601150 SPTA1P02549 2419 aa15.86■□□□□ 0.13
TRIM28-215ENST00000601150 SUV39H1O43463 412 aa15.86■□□□□ 0.13
TRIM28-215ENST00000601150 SH3BGRLO75368 114 aa15.86■□□□□ 0.13
TRIM28-215ENST00000601150 OTCP00480 354 aa15.86■□□□□ 0.13
TRIM28-215ENST00000601150 KRT4P19013 534 aa15.86■□□□□ 0.13
TRIM28-215ENST00000601150 PTX3P26022 381 aaPredicted RBP15.86■□□□□ 0.13
TRIM28-215ENST00000601150 CERS1P27544 350 aa15.86■□□□□ 0.13
TRIM28-215ENST00000601150 DEKP35659 375 aaKnown RBP15.86■□□□□ 0.13
TRIM28-215ENST00000601150 PRKAA2P54646 552 aa15.86■□□□□ 0.13
TRIM28-215ENST00000601150 CDH13P55290 713 aa15.86■□□□□ 0.13
TRIM28-215ENST00000601150 ZNF678Q5SXM1 525 aa15.86■□□□□ 0.13
TRIM28-215ENST00000601150 DEPDC1Q5TB30 811 aa15.86■□□□□ 0.13
TRIM28-215ENST00000601150 QSOX2Q6ZRP7 698 aa15.86■□□□□ 0.13
TRIM28-215ENST00000601150 RPS27LQ71UM5 84 aaKnown RBP15.86■□□□□ 0.13
TRIM28-215ENST00000601150 PRICKLE2Q7Z3G6 844 aa15.86■□□□□ 0.13
TRIM28-215ENST00000601150 UBE3DQ7Z6J8 389 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms