RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 TCF7L2Q9NQB0 619 aa12.07□□□□□ -0.48
UPF1-208ENST00000600012 FARSBQ9NSD9 589 aaKnown RBP12.07□□□□□ -0.48
UPF1-208ENST00000600012 HEY2Q9UBP5 337 aa12.07□□□□□ -0.48
UPF1-208ENST00000600012 PLEKHB1Q9UF11 243 aaPredicted RBP12.07□□□□□ -0.48
UPF1-208ENST00000600012 GIMAP2Q9UG22 337 aa12.07□□□□□ -0.48
UPF1-208ENST00000600012 POMT2Q9UKY4 750 aa12.07□□□□□ -0.48
UPF1-208ENST00000600012 SNX7Q9UNH6 387 aa12.07□□□□□ -0.48
UPF1-208ENST00000600012 MAP4K5Q9Y4K4 846 aa12.07□□□□□ -0.48
UPF1-208ENST00000600012 E9PBE3 544 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 MEN1O00255 615 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 PRICKLE3O43900 615 aaPredicted RBP12.06□□□□□ -0.48
UPF1-208ENST00000600012 KLHL41O60662 606 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 UGDHO60701 494 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 DPM1O60762 260 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 CEACAM4O75871 244 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 WFS1O76024 890 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 C1GALT1C1LP0DN25 315 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 POLR2CP19387 275 aaPredicted RBP12.06□□□□□ -0.48
UPF1-208ENST00000600012 CDH3P22223 829 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 PCDH1Q08174 1060 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 ABRAXAS2Q15018 415 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 TBCCQ15814 346 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 XKR7Q5GH72 579 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 ATG9BQ674R7 924 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 ADNP2Q6IQ32 1131 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 ACAD11Q709F0 780 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 DSELQ8IZU8 1212 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 RNF175Q8N4F7 328 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 ENDOVQ8N8Q3 282 aaKnown RBP12.06□□□□□ -0.48
UPF1-208ENST00000600012 SLC38A9Q8NBW4 561 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 OR2T11Q8NH01 316 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 SSC4DQ8WTU2 575 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 MTFMTQ96DP5 389 aaKnown RBP12.06□□□□□ -0.48
UPF1-208ENST00000600012 CLIP3Q96DZ5 547 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 PTCD3Q96EY7 689 aaKnown RBP12.06□□□□□ -0.48
UPF1-208ENST00000600012 MAELQ96JY0 434 aaKnown RBP12.06□□□□□ -0.48
UPF1-208ENST00000600012 NLNQ9BYT8 704 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 PCBD2Q9H0N5 130 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 PELI2Q9HAT8 420 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 SLC6A20Q9NP91 592 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 C1GALT1Q9NS00 363 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 OR6C2Q9NZP2 312 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 ZNF490Q9ULM2 529 aaPredicted RBP12.06□□□□□ -0.48
UPF1-208ENST00000600012 TEX15Q9BXT5 2789 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 FER1L5A0AVI2 2057 aa12.06□□□□□ -0.48
UPF1-208ENST00000600012 UNC79Q9P2D8 2635 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 GSAPA4D1B5 854 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 SLC9B1P1A6NJY1 282 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 PDYNP01213 254 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 KRT6AP02538 564 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 KRT6BP04259 564 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 MSL3P1P0C860 447 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 PCNAP12004 261 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 RORAP35398 523 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 HNF4AP41235 474 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 CASP2P42575 452 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 KRT6CP48668 564 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 NEK2P51955 445 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 DDX39BQ13838 428 aaKnown RBP12.05□□□□□ -0.48
UPF1-208ENST00000600012 E2F2Q14209 437 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 SF1Q15637 639 aaKnown RBP12.05□□□□□ -0.48
UPF1-208ENST00000600012 INPP5JQ15735 1006 aaPredicted RBP12.05□□□□□ -0.48
UPF1-208ENST00000600012 LSM12Q3MHD2 195 aaKnown RBP12.05□□□□□ -0.48
UPF1-208ENST00000600012 TMEM198Q66K66 360 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 MED25Q71SY5 747 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 ADCK2Q7Z695 626 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 TRIM73Q86UV7 250 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 TMEM102Q8N9M5 508 aaPredicted RBP12.05□□□□□ -0.48
UPF1-208ENST00000600012 ZNF740Q8NDX6 193 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 OR2L3Q8NG85 312 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 FLVCR1-AS1Q8TAF5 88 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 SELENOMQ8WWX9 145 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 CCT6BQ92526 530 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 WDR34Q96EX3 536 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 MARK4Q96L34 752 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 MAGEB10Q96LZ2 347 aaPredicted RBP12.05□□□□□ -0.48
UPF1-208ENST00000600012 PPM1MQ96MI6 270 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 PLCD4Q9BRC7 762 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 CCDC28BQ9BUN5 200 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 EFCAB11Q9BUY7 163 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 EHD1Q9H4M9 534 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 ELOVL6Q9H5J4 265 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 ACTR5Q9H9F9 607 aaPredicted RBP12.05□□□□□ -0.48
UPF1-208ENST00000600012 MRPS30Q9NP92 439 aaKnown RBP12.05□□□□□ -0.48
UPF1-208ENST00000600012 ACTR10Q9NZ32 417 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 TCFL5Q9UL49 500 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 SNX6Q9UNH7 406 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 KLHL20Q9Y2M5 609 aa12.05□□□□□ -0.48
UPF1-208ENST00000600012 CACNA1DQ01668 2161 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 IGKV1-8A0A0C4DH67 115 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 ERICH4A6NGS2 130 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 TMEM150CB9EJG8 249 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 H7BY64 318 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 FCHO1O14526 889 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 MAP3K7O43318 606 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 NRP2O60462 931 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 DCTN3O75935 186 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 CCNDBP1O95273 360 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 UGT2B7P16662 529 aa12.04□□□□□ -0.48
UPF1-208ENST00000600012 CMPK1P30085 196 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms