RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 ING2Q9H160 280 aa18.4■□□□□ 0.54
SHKBP1-221ENST00000599833 CLK4Q9HAZ1 481 aaKnown RBP18.4■□□□□ 0.54
SHKBP1-221ENST00000599833 MLXIPLQ9NP71 852 aa18.4■□□□□ 0.54
SHKBP1-221ENST00000599833 PSD3Q9NYI0 1048 aa18.4■□□□□ 0.54
SHKBP1-221ENST00000599833 PPT2Q9UMR5 302 aa18.4■□□□□ 0.54
SHKBP1-221ENST00000599833 PCDHGA11Q9Y5H2 935 aa18.4■□□□□ 0.54
SHKBP1-221ENST00000599833 SPTA1P02549 2419 aa18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 URADA6NGE7 173 aa18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 AGPSO00116 658 aa18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 TGFB1P01137 390 aa18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 PCNAP12004 261 aa18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 PLA2G16P53816 162 aa18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 DNAJB13P59910 316 aa18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 RPS13P62277 151 aaKnown RBP18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 BTN3A2P78410 334 aa18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 Q0VFX4 171 aa18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 KRT71Q3SY84 523 aa18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 DCAF10Q5QP82 559 aa18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 NIPAL1Q6NVV3 410 aa18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 RDH11Q8TC12 318 aa18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 CCT6BQ92526 530 aa18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 IP6K3Q96PC2 410 aa18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 OR1F2PQ96R84 312 aa18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 ZNF382Q96SR6 550 aa18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 MTERF1Q99551 399 aaKnown RBP18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 RBCK1Q9BYM8 510 aa18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 OR51B5Q9H339 312 aa18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 OXSMQ9NWU1 459 aa18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 KCMF1Q9P0J7 381 aa18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 SLC17A7Q9P2U7 560 aa18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 TUBD1Q9UJT1 453 aa18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 FBXL4Q9UKA2 621 aa18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 MKL2Q9ULH7 1088 aa18.39■□□□□ 0.53
SHKBP1-221ENST00000599833 FAM227AF5H4B4 570 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 FOXE1O00358 373 aaPredicted RBP18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 RTCAO00442 366 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 PLPP1O14494 284 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 ALOX12BO75342 701 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 SPAG7O75391 227 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 SUPT7LO94864 414 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 OR4F21O95013 312 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 IGHEP01854 428 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 PDGFAP04085 211 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 CYC1P08574 325 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 MYL2P10916 166 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 COX6A1P12074 109 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 ETV4P43268 484 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 HNRNPFP52597 415 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 EMP2P54851 167 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 SOX8P57073 446 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 KCNAB2Q13303 367 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 TMEM35AQ53FP2 167 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 KHDRBS2Q5VWX1 349 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 LRIG3Q6UXM1 1119 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 LANCL3Q6ZV70 420 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 EXOC3L1Q86VI1 746 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 TMEM102Q8N9M5 508 aaPredicted RBP18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 TMEM52Q8NDY8 209 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 SLC39A7Q92504 469 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 ZBTB9Q96C00 473 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 CMTM7Q96FZ5 175 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 WDR77Q9BQA1 342 aaPredicted RBP18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 YIPF2Q9BWQ6 316 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 NPLQ9BXD5 320 aaPredicted RBP18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 ADNPQ9H2P0 1102 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 TNFRSF12AQ9NP84 129 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 FARSBQ9NSD9 589 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 TRPS1Q9UHF7 1281 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 ADGRE2Q9UHX3 823 aa18.38■□□□□ 0.53
SHKBP1-221ENST00000599833 PRRC2CQ9Y520 2896 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-221ENST00000599833 IGKV3D-11A0A0A0MRZ8 115 aa18.37■□□□□ 0.53
SHKBP1-221ENST00000599833 SH3BGRLO75368 114 aa18.37■□□□□ 0.53
SHKBP1-221ENST00000599833 OTCP00480 354 aa18.37■□□□□ 0.53
SHKBP1-221ENST00000599833 FHP07954 510 aa18.37■□□□□ 0.53
SHKBP1-221ENST00000599833 CPA3P15088 417 aa18.37■□□□□ 0.53
SHKBP1-221ENST00000599833 IL10P22301 178 aa18.37■□□□□ 0.53
SHKBP1-221ENST00000599833 CERS1P27544 350 aa18.37■□□□□ 0.53
SHKBP1-221ENST00000599833 DDX39BQ13838 428 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-221ENST00000599833 PCOLCEQ15113 449 aa18.37■□□□□ 0.53
SHKBP1-221ENST00000599833 TCHHL1Q5QJ38 904 aaPredicted RBP18.37■□□□□ 0.53
SHKBP1-221ENST00000599833 TRIM40Q6P9F5 258 aa18.37■□□□□ 0.53
SHKBP1-221ENST00000599833 ATG14Q6ZNE5 492 aa18.37■□□□□ 0.53
SHKBP1-221ENST00000599833 MILR1Q7Z6M3 343 aa18.37■□□□□ 0.53
SHKBP1-221ENST00000599833 MYLK4Q86YV6 388 aaPredicted RBP18.37■□□□□ 0.53
SHKBP1-221ENST00000599833 C10orf107Q8IVU9 208 aa18.37■□□□□ 0.53
SHKBP1-221ENST00000599833 PLPP5Q8NEB5 264 aa18.37■□□□□ 0.53
SHKBP1-221ENST00000599833 TCP10LQ8TDR4 215 aa18.37■□□□□ 0.53
SHKBP1-221ENST00000599833 AGAP11Q8TF27 550 aa18.37■□□□□ 0.53
SHKBP1-221ENST00000599833 TSLPQ969D9 159 aa18.37■□□□□ 0.53
SHKBP1-221ENST00000599833 TBC1D20Q96BZ9 403 aa18.37■□□□□ 0.53
SHKBP1-221ENST00000599833 ABHD17AQ96GS6 310 aa18.37■□□□□ 0.53
SHKBP1-221ENST00000599833 CSF3RQ99062 836 aa18.37■□□□□ 0.53
SHKBP1-221ENST00000599833 SORBS1Q9BX66 1292 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-221ENST00000599833 IGHV1-45A0A0A0MS14 117 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 TGFBR3LH3BV60 316 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 SAP18O00422 153 aaKnown RBP18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 CYR61O00622 381 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 PRB1P04280 392 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 HEXBP07686 556 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 ATP5A1P25705 553 aaKnown RBP18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms