RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 TBCCQ15814 346 aa14.22□□□□□ -0.13
TRIM28-205ENST00000595028 ADPRMQ3LIE5 342 aa14.22□□□□□ -0.13
TRIM28-205ENST00000595028 PLEKHN1Q494U1 663 aaPredicted RBP14.22□□□□□ -0.13
TRIM28-205ENST00000595028 KLC3Q6P597 504 aa14.22□□□□□ -0.13
TRIM28-205ENST00000595028 CUZD1Q86UP6 607 aa14.22□□□□□ -0.13
TRIM28-205ENST00000595028 PLPP5Q8NEB5 264 aa14.22□□□□□ -0.13
TRIM28-205ENST00000595028 MS4A6EQ96DS6 147 aa14.22□□□□□ -0.13
TRIM28-205ENST00000595028 VPS11Q9H270 941 aa14.22□□□□□ -0.13
TRIM28-205ENST00000595028 PTGFRNQ9P2B2 879 aa14.22□□□□□ -0.13
TRIM28-205ENST00000595028 ZNF180Q9UJW8 692 aa14.22□□□□□ -0.13
TRIM28-205ENST00000595028 PCDHGA10Q9Y5H3 936 aa14.22□□□□□ -0.13
TRIM28-205ENST00000595028 ITPR3Q14573 2671 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 LRIT2A6NDA9 550 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 ANKDD1BA6NHY2 528 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 POC1B-GALNT4F8VUJ3 575 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 KLK8O60259 260 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 AGFG2O95081 481 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 RHOXF2BP0C7M4 288 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 ITGAMP11215 1152 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 RNH1P13489 461 aaKnown RBP14.21□□□□□ -0.13
TRIM28-205ENST00000595028 ICAM2P13598 275 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 GFAPP14136 432 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 HPDP32754 393 aaPredicted RBP14.21□□□□□ -0.13
TRIM28-205ENST00000595028 CASP2P42575 452 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 MSH2P43246 934 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 NAA30Q147X3 362 aaPredicted RBP14.21□□□□□ -0.13
TRIM28-205ENST00000595028 NSDHLQ15738 373 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 TECRLQ5HYJ1 363 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 PLAG1Q6DJT9 500 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 QSOX2Q6ZRP7 698 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 LINC00696Q6ZRV3 163 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 CA13Q8N1Q1 262 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 PLD6Q8N2A8 252 aaKnown RBP14.21□□□□□ -0.13
TRIM28-205ENST00000595028 SIRT6Q8N6T7 355 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 AMER2Q8N7J2 671 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 GALNT11Q8NCW6 608 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 LRRN4CLQ8ND94 238 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 OR2L5Q8NG80 312 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 UHMK1Q8TAS1 419 aaKnown RBP14.21□□□□□ -0.13
TRIM28-205ENST00000595028 DCAKDQ8WVC6 231 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 FAR2Q96K12 515 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 LMF1Q96S06 567 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 RHOXF2Q9BQY4 288 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 RHBGQ9H310 441 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 ZNF490Q9ULM2 529 aaPredicted RBP14.21□□□□□ -0.13
TRIM28-205ENST00000595028 ESPL1Q14674 2120 aa14.21□□□□□ -0.13
TRIM28-205ENST00000595028 HIVEP3Q5T1R4 2406 aa14.21□□□□□ -0.14
TRIM28-205ENST00000595028 OTOGQ6ZRI0 2925 aa14.2□□□□□ -0.14
TRIM28-205ENST00000595028 A0A088AWK7 358 aa14.2□□□□□ -0.14
TRIM28-205ENST00000595028 A0A0G2JN53 185 aa14.2□□□□□ -0.14
TRIM28-205ENST00000595028 EXOC1LA0A1B0GW35 172 aa14.2□□□□□ -0.14
TRIM28-205ENST00000595028 PSMD12O00232 456 aaPredicted RBP14.2□□□□□ -0.14
TRIM28-205ENST00000595028 B4GALT2O60909 372 aa14.2□□□□□ -0.14
TRIM28-205ENST00000595028 WFS1O76024 890 aa14.2□□□□□ -0.14
TRIM28-205ENST00000595028 UQCRHP07919 91 aa14.2□□□□□ -0.14
TRIM28-205ENST00000595028 EPB42P16452 691 aa14.2□□□□□ -0.14
TRIM28-205ENST00000595028 POU3F2P20265 443 aaPredicted RBP14.2□□□□□ -0.14
TRIM28-205ENST00000595028 ZNF10P21506 573 aaPredicted RBP14.2□□□□□ -0.14
TRIM28-205ENST00000595028 CNTFP26441 200 aa14.2□□□□□ -0.14
TRIM28-205ENST00000595028 UQCRFS1P47985 274 aa14.2□□□□□ -0.14
TRIM28-205ENST00000595028 ALDH18A1P54886 795 aaKnown RBP14.2□□□□□ -0.14
TRIM28-205ENST00000595028 PCDH1Q08174 1060 aa14.2□□□□□ -0.14
TRIM28-205ENST00000595028 HIST2H2ACQ16777 129 aaPredicted RBP14.2□□□□□ -0.14
TRIM28-205ENST00000595028 PFKFB4Q16877 469 aa14.2□□□□□ -0.14
TRIM28-205ENST00000595028 BTBD16Q32M84 506 aa14.2□□□□□ -0.14
TRIM28-205ENST00000595028 SFT2D3Q587I9 215 aa14.2□□□□□ -0.14
TRIM28-205ENST00000595028 HIST2H2AA3Q6FI13 130 aa14.2□□□□□ -0.14
TRIM28-205ENST00000595028 TRIM40Q6P9F5 258 aa14.2□□□□□ -0.14
TRIM28-205ENST00000595028 PAPD4Q6PIY7 484 aaKnown RBP14.2□□□□□ -0.14
TRIM28-205ENST00000595028 TRMT10CQ7L0Y3 403 aaKnown RBP14.2□□□□□ -0.14
TRIM28-205ENST00000595028 DNAJB14Q8TBM8 379 aa14.2□□□□□ -0.14
TRIM28-205ENST00000595028 UBE2E3Q969T4 207 aa14.2□□□□□ -0.14
TRIM28-205ENST00000595028 CNDP1Q96KN2 507 aa14.2□□□□□ -0.14
TRIM28-205ENST00000595028 QRFPRQ96P65 431 aa14.2□□□□□ -0.14
TRIM28-205ENST00000595028 LPAR4Q99677 370 aa14.2□□□□□ -0.14
TRIM28-205ENST00000595028 REXO4Q9GZR2 422 aaKnown RBP14.2□□□□□ -0.14
TRIM28-205ENST00000595028 CPSF2Q9P2I0 782 aaKnown RBP14.2□□□□□ -0.14
TRIM28-205ENST00000595028 IGKV3D-11A0A0A0MRZ8 115 aa14.19□□□□□ -0.14
TRIM28-205ENST00000595028 TRIM49D1C9J1S8 452 aa14.19□□□□□ -0.14
TRIM28-205ENST00000595028 VPS4BO75351 444 aa14.19□□□□□ -0.14
TRIM28-205ENST00000595028 CERS1P27544 350 aa14.19□□□□□ -0.14
TRIM28-205ENST00000595028 TSFMP43897 325 aaKnown RBP14.19□□□□□ -0.14
TRIM28-205ENST00000595028 PLA2G16P53816 162 aa14.19□□□□□ -0.14
TRIM28-205ENST00000595028 BTN3A2P78410 334 aa14.19□□□□□ -0.14
TRIM28-205ENST00000595028 ARG2P78540 354 aa14.19□□□□□ -0.14
TRIM28-205ENST00000595028 ZNF169Q14929 603 aaPredicted RBP14.19□□□□□ -0.14
TRIM28-205ENST00000595028 TLR1Q15399 786 aa14.19□□□□□ -0.14
TRIM28-205ENST00000595028 EXT1Q16394 746 aa14.19□□□□□ -0.14
TRIM28-205ENST00000595028 B3GNTL1Q67FW5 361 aaPredicted RBP14.19□□□□□ -0.14
TRIM28-205ENST00000595028 ZNF787Q6DD87 383 aa14.19□□□□□ -0.14
TRIM28-205ENST00000595028 GRHL2Q6ISB3 625 aa14.19□□□□□ -0.14
TRIM28-205ENST00000595028 MED27Q6P2C8 311 aa14.19□□□□□ -0.14
TRIM28-205ENST00000595028 ABHD17CQ6PCB6 329 aa14.19□□□□□ -0.14
TRIM28-205ENST00000595028 LAS2Q8IYD9 372 aa14.19□□□□□ -0.14
TRIM28-205ENST00000595028 TEX9Q8N6V9 391 aa14.19□□□□□ -0.14
TRIM28-205ENST00000595028 ADAMTS18Q8TE60 1221 aa14.19□□□□□ -0.14
TRIM28-205ENST00000595028 SNRNP40Q96DI7 357 aaKnown RBP14.19□□□□□ -0.14
TRIM28-205ENST00000595028 PTCHD1Q96NR3 888 aa14.19□□□□□ -0.14
TRIM28-205ENST00000595028 NPLQ9BXD5 320 aaPredicted RBP14.19□□□□□ -0.14
TRIM28-205ENST00000595028 MS4A8Q9BY19 250 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms