RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 KCNE2Q9Y6J6 123 aa13.06□□□□□ -0.32
VMP1-209ENST00000588915 ZNHIT1O43257 154 aa13.05□□□□□ -0.32
VMP1-209ENST00000588915 HS6ST1O60243 411 aa13.05□□□□□ -0.32
VMP1-209ENST00000588915 CD1EP15812 388 aa13.05□□□□□ -0.32
VMP1-209ENST00000588915 MAOAP21397 527 aa13.05□□□□□ -0.32
VMP1-209ENST00000588915 GPR143P51810 404 aa13.05□□□□□ -0.32
VMP1-209ENST00000588915 HSD17B7P56937 341 aa13.05□□□□□ -0.32
VMP1-209ENST00000588915 HYAL2Q12891 473 aa13.05□□□□□ -0.32
VMP1-209ENST00000588915 KCTD19Q17RG1 926 aaPredicted RBP13.05□□□□□ -0.32
VMP1-209ENST00000588915 CMPK2Q5EBM0 449 aa13.05□□□□□ -0.32
VMP1-209ENST00000588915 RBM20Q5T481 1227 aaKnown RBP13.05□□□□□ -0.32
VMP1-209ENST00000588915 NXPE4Q6UWF7 544 aa13.05□□□□□ -0.32
VMP1-209ENST00000588915 ACAD11Q709F0 780 aa13.05□□□□□ -0.32
VMP1-209ENST00000588915 CYP4Z2PQ8N1L4 340 aa13.05□□□□□ -0.32
VMP1-209ENST00000588915 ANKRD53Q8N9V6 530 aa13.05□□□□□ -0.32
VMP1-209ENST00000588915 RND1Q92730 232 aa13.05□□□□□ -0.32
VMP1-209ENST00000588915 VMP1Q96GC9 406 aa13.05□□□□□ -0.32
VMP1-209ENST00000588915 SEC16BQ96JE7 1060 aa13.05□□□□□ -0.32
VMP1-209ENST00000588915 SPNS1Q9H2V7 528 aa13.05□□□□□ -0.32
VMP1-209ENST00000588915 KCNJ16Q9NPI9 418 aa13.05□□□□□ -0.32
VMP1-209ENST00000588915 NECTIN3Q9NQS3 549 aa13.05□□□□□ -0.32
VMP1-209ENST00000588915 TNFRSF10DQ9UBN6 386 aa13.05□□□□□ -0.32
VMP1-209ENST00000588915 YARS2Q9Y2Z4 477 aaKnown RBP13.05□□□□□ -0.32
VMP1-209ENST00000588915 VWA7Q9Y334 891 aa13.05□□□□□ -0.32
VMP1-209ENST00000588915 DYRK1BQ9Y463 629 aa13.05□□□□□ -0.32
VMP1-209ENST00000588915 TRBV11-1A0A0K0K1C0 115 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 CLDN4O14493 209 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 ITGA10O75578 1167 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 ZFAND5O76080 213 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 B3GALT4O96024 378 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 TUBB4AP04350 444 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 GSTM2P28161 218 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 FNTAP49354 379 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 SSR4P51571 173 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 RAB8AP61006 207 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 STXBP1P61764 594 aaKnown RBP13.04□□□□□ -0.32
VMP1-209ENST00000588915 TFF3Q07654 80 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 RNASEH2BQ5TBB1 312 aaKnown RBP13.04□□□□□ -0.32
VMP1-209ENST00000588915 FAM45BPQ6NSW5 357 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 CEP128Q6ZU80 1094 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 THOC6Q86W42 341 aaKnown RBP13.04□□□□□ -0.32
VMP1-209ENST00000588915 SCUBE1Q8IWY4 988 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 DMRTC2Q8IXT2 367 aaPredicted RBP13.04□□□□□ -0.32
VMP1-209ENST00000588915 CA13Q8N1Q1 262 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 TTLQ8NG68 377 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 FAM45AQ8TCE6 357 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 CREB3L4Q8TEY5 395 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 CERS2Q96G23 380 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 FAR2Q96K12 515 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 CCDC77Q9BR77 488 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 KCNN3Q9UGI6 736 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 FBXW2Q9UKT8 454 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 RNF6Q9Y252 685 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 JRKLQ9Y4A0 524 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 HRH3Q9Y5N1 445 aa13.04□□□□□ -0.32
VMP1-209ENST00000588915 MTORP42345 2549 aa13.03□□□□□ -0.32
VMP1-209ENST00000588915 A0A088AWK7 358 aa13.03□□□□□ -0.32
VMP1-209ENST00000588915 A8MUA0 341 aa13.03□□□□□ -0.32
VMP1-209ENST00000588915 MYO1DO94832 1006 aa13.03□□□□□ -0.32
VMP1-209ENST00000588915 TOXO94900 526 aa13.03□□□□□ -0.32
VMP1-209ENST00000588915 GUCA1CO95843 209 aa13.03□□□□□ -0.32
VMP1-209ENST00000588915 HOXD4P09016 255 aaPredicted RBP13.03□□□□□ -0.32
VMP1-209ENST00000588915 ZNF10P21506 573 aaPredicted RBP13.03□□□□□ -0.32
VMP1-209ENST00000588915 MSX1P28360 303 aa13.03□□□□□ -0.32
VMP1-209ENST00000588915 HPDP32754 393 aaPredicted RBP13.03□□□□□ -0.32
VMP1-209ENST00000588915 HNMTP50135 292 aa13.03□□□□□ -0.32
VMP1-209ENST00000588915 CDKL1Q00532 357 aa13.03□□□□□ -0.32
VMP1-209ENST00000588915 RBBP5Q15291 538 aaKnown RBP13.03□□□□□ -0.32
VMP1-209ENST00000588915 PPP1R3AQ16821 1122 aa13.03□□□□□ -0.32
VMP1-209ENST00000588915 TEDDM1Q5T9Z0 273 aa13.03□□□□□ -0.32
VMP1-209ENST00000588915 HECTD2Q5U5R9 776 aa13.03□□□□□ -0.32
VMP1-209ENST00000588915 CES4AQ5XG92 561 aa13.03□□□□□ -0.32
VMP1-209ENST00000588915 SBSNQ6UWP8 590 aa13.03□□□□□ -0.32
VMP1-209ENST00000588915 ZNF595Q8IYB9 648 aa13.03□□□□□ -0.32
VMP1-209ENST00000588915 MARVELD2Q8N4S9 558 aa13.03□□□□□ -0.32
VMP1-209ENST00000588915 PSD4Q8NDX1 1056 aa13.03□□□□□ -0.32
VMP1-209ENST00000588915 GAL3ST3Q96A11 431 aa13.03□□□□□ -0.32
VMP1-209ENST00000588915 PITHD1Q9GZP4 211 aaPredicted RBP13.03□□□□□ -0.32
VMP1-209ENST00000588915 RHBGQ9H310 441 aa13.03□□□□□ -0.32
VMP1-209ENST00000588915 KLHL31Q9H511 634 aa13.03□□□□□ -0.32
VMP1-209ENST00000588915 PRTFDC1Q9NRG1 225 aa13.03□□□□□ -0.32
VMP1-209ENST00000588915 SLC22A14Q9Y267 594 aa13.03□□□□□ -0.32
VMP1-209ENST00000588915 MRPS33Q9Y291 106 aaKnown RBP13.03□□□□□ -0.32
VMP1-209ENST00000588915 SPG11Q96JI7 2443 aa13.03□□□□□ -0.32
VMP1-209ENST00000588915 OR14I1A6ND48 311 aa13.02□□□□□ -0.33
VMP1-209ENST00000588915 ACOT7O00154 380 aa13.02□□□□□ -0.33
VMP1-209ENST00000588915 PGRMC1O00264 195 aaKnown RBP13.02□□□□□ -0.33
VMP1-209ENST00000588915 CDC40O60508 579 aaKnown RBP eCLIP13.02□□□□□ -0.33
VMP1-209ENST00000588915 H2AFYO75367 372 aaKnown RBP13.02□□□□□ -0.33
VMP1-209ENST00000588915 HNF4AP41235 474 aa13.02□□□□□ -0.33
VMP1-209ENST00000588915 RCN2Q14257 317 aa13.02□□□□□ -0.33
VMP1-209ENST00000588915 EMC4Q5J8M3 183 aa13.02□□□□□ -0.33
VMP1-209ENST00000588915 MDGA2Q7Z553 956 aa13.02□□□□□ -0.33
VMP1-209ENST00000588915 TMPRSS11BQ86T26 416 aa13.02□□□□□ -0.33
VMP1-209ENST00000588915 TMEM132CQ8N3T6 1108 aa13.02□□□□□ -0.33
VMP1-209ENST00000588915 NKAPQ8N5F7 415 aaKnown RBP13.02□□□□□ -0.33
VMP1-209ENST00000588915 C7orf57Q8NEG2 295 aa13.02□□□□□ -0.33
VMP1-209ENST00000588915 OR52N2Q8NGI0 321 aa13.02□□□□□ -0.33
VMP1-209ENST00000588915 MS4A14Q96JA4 679 aa13.02□□□□□ -0.33
VMP1-209ENST00000588915 PDLIM2Q96JY6 352 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms