RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 GRIP1Q9Y3R0 1128 aa4□□□□□ -1.77
LIG3-211ENST00000588713 ZNF451Q9Y4E5 1061 aa4□□□□□ -1.77
LIG3-211ENST00000588713 PCDHA9Q9Y5H5 950 aa4□□□□□ -1.77
LIG3-211ENST00000588713 NSD1Q96L73 2696 aaPredicted RBP4□□□□□ -1.77
LIG3-211ENST00000588713 RP1P56715 2156 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 ELOA3CA0A087WX78 387 aaPredicted RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 CCDC154A6NI56 674 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 METTL15A6NJ78 407 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 ELOA3DA6NLF2 546 aaPredicted RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 CLDN24A6NM45 220 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 SYCE1LA8MT33 242 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 FAM171A2A8MVW0 826 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 M0R3G1 203 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 PSMD11O00231 422 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 EEF2KO00418 725 aaKnown RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 CDK2AP1O14519 115 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 HCRTO43612 131 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 TPST1O60507 370 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 IPO13O94829 963 aaKnown RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 FKBP9O95302 570 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 WISP3O95389 354 aaPredicted RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 SNAP29O95721 258 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 CHEK2O96017 543 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 ANXA6P08133 673 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 HTR1AP08908 422 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 LTA4HP09960 611 aaKnown RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 ALDOCP09972 364 aaKnown RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 FAM157BP0CG42 384 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 RAP2AP10114 183 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 GOT1P17174 413 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 BDNFP23560 247 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 F8A1P23610 371 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 SLC6A2P23975 617 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 PTPN3P26045 913 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 ELK4P28324 431 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 UGT2B10P36537 528 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 ETV6P41212 452 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 KIR3DL1P43629 444 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 ACADSBP45954 432 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 YAP1P46937 504 aaKnown RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 GLRBP48167 497 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 PPP3CCP48454 512 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 TRPC1P48995 793 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 SULT1E1P49888 294 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 SLC12A2P55011 1212 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 TPD52P55327 224 aaPredicted RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 DEFA1P59665 94 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 DEFA3P59666 94 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 GNG2P59768 71 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 CXCR4P61073 352 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 TUBA1BP68363 451 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 IFITM3Q01628 133 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 PRPSAP1Q14558 356 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 POLD3Q15054 466 aaPredicted RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 EIF4HQ15056 248 aaKnown RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 SF3B4Q15427 424 aaKnown RBP eCLIP3.99□□□□□ -1.777e-13■■■■■ 53.4
LIG3-211ENST00000588713 CHRNA6Q15825 494 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 SLC14A2Q15849 920 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 FAM83EQ2M2I3 478 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 ELOA3BQ3SY89 546 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 PLEKHN1Q494U1 663 aaPredicted RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 RAB6CQ53S08 254 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 ZC3H12BQ5HYM0 836 aaKnown RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 PCID2Q5JVF3 399 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 LDLRAP1Q5SW96 308 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 C6orf141Q5SZD1 244 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 HECTD3Q5T447 861 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 AGAP9Q5VTM2 703 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 ZNF691Q5VV52 312 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 C9orf57Q5W0N0 161 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 BSPRYQ5W0U4 402 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 KANK2Q63ZY3 851 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 ZNF544Q6NX49 715 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 XKRXQ6PP77 449 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 MEX3BQ6ZN04 569 aaKnown RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 C16orf47Q6ZP98 133 aaPredicted RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 TUBA1AQ71U36 451 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 BNIPLQ7Z465 357 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 R3HCC1LQ7Z5L2 792 aaKnown RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 SPATA19Q7Z5L4 167 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 BTLAQ7Z6A9 289 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 SYT9Q86SS6 491 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 SLC22A16Q86VW1 577 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 UNC93AQ86WB7 457 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 FAM129CQ86XR2 697 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 SPPL2CQ8IUH8 684 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 PHYKPLQ8IUZ5 450 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 LYSMD2Q8IV50 215 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 FUNDC1Q8IVP5 155 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 IQCF2Q8IXL9 164 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 RIMKLAQ8IXN7 391 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 RBFAQ8N0V3 343 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 ZNF808Q8N4W9 903 aaPredicted RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 CCDC185Q8N715 623 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 CCNYL1Q8N7R7 359 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 ARL10Q8N8L6 244 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 ASCC1Q8N9N2 400 aaKnown RBP3.99□□□□□ -1.77
LIG3-211ENST00000588713 DNAAF3Q8N9W5 541 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 PLPP7Q8NBV4 271 aa3.99□□□□□ -1.77
LIG3-211ENST00000588713 C2CD4AQ8NCU7 369 aaPredicted RBP3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms