RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	11.18	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	ZNF275	Q9NSD4	429 aa	Predicted RBP	11.18	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	DDX28	Q9NUL7	540 aa	Known RBP	11.18	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	VNN3	Q9NY84	501 aa		11.18	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	WWOX	Q9NZC7	414 aa		11.18	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	PDE10A	Q9Y233	779 aa		11.18	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	PCDHGB6	Q9Y5F9	930 aa		11.18	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	11.18	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063		A0A1B0GVM2	712 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	hCG_2039718	K7EN88	272 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	FMO6P	O60774	539 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	CLPX	O76031	633 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	CDH1	P12830	882 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	CCR2	P41597	374 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	SCRN3	Q0VDG4	424 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	PHKG1	Q16816	387 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	RGS21	Q2M5E4	152 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	XKR7	Q5GH72	579 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	C6orf141	Q5SZD1	244 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	SPATA19	Q7Z5L4	167 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	PTRH1	Q86Y79	214 aa	Known RBP	11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	ELMOD2	Q8IZ81	293 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	LIX1	Q8N485	282 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	PDPR	Q8NCN5	879 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	NETO1	Q8TDF5	533 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	PLD4	Q96BZ4	506 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	ITPKC	Q96DU7	683 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	TSSK3	Q96PN8	268 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	MAGEH1	Q9H213	219 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	IL21	Q9HBE4	155 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	SLC25A37	Q9NYZ2	338 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	CDH7	Q9ULB5	785 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063		A0A0C4DFX4	3053 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	BLACE	A4D250	179 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	OR7A17	O14581	309 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	ATXN7	O15265	892 aa	Predicted RBP	11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	GRM6	O15303	877 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	FADS2	O95864	444 aa	Known RBP	11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	SERPINA1	P01009	418 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	EPO	P01588	193 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	PRR35	P0CG20	571 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	RAP2A	P10114	183 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	EPCAM	P16422	314 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	PSMB9	P28065	219 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	BMPR1A	P36894	532 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	EEFSEC	P57772	596 aa	Known RBP	11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	NCS1	P62166	190 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	YOD1	Q5VVQ6	348 aa	Predicted RBP	11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	LAIR1	Q6GTX8	287 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	APCDD1	Q8J025	514 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	CPA6	Q8N4T0	437 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	FAM216A	Q8WUB2	273 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	SKA2	Q8WVK7	121 aa	Predicted RBP	11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	KIAA1143	Q96AT1	154 aa	Predicted RBP	11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	RAD51AP1	Q96B01	352 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	INPP5K	Q9BT40	448 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	SLC46A2	Q9BY10	475 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	MFRP	Q9BY79	579 aa		11.17	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	HSBP1L1	C9JCN9	74 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	ABCB7	O75027	752 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	CA3	P07451	260 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	HTR1E	P28566	365 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	BMI1	P35226	326 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	SLC9A3	P48764	834 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	CLCN7	P51798	805 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	AFF3	P51826	1226 aa	Known RBP	11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	SNTA1	Q13424	505 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	GTF2H2	Q13888	395 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	GTF2H2C	Q6P1K8	395 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	SUSD1	Q6UWL2	747 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	TSPAN33	Q86UF1	283 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	CMTM8	Q8IZV2	173 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	C12orf76	Q8N812	135 aa	Predicted RBP	11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	ZNF555	Q8NEP9	628 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	PYCR2	Q96C36	320 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	RIPOR3	Q96MK2	946 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	GPR63	Q9BZJ6	419 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	TRIM2	Q9C040	744 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	CIPC	Q9C0C6	399 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	RIC8B	Q9NVN3	520 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	LHX3	Q9UBR4	397 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	LSM7	Q9UK45	103 aa	Known RBP	11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	RNF24	Q9Y225	148 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	SSUH2	Q9Y2M2	353 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	ZNF451	Q9Y4E5	1061 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	PIKFYVE	Q9Y2I7	2098 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063		A0A1B0GTQ1	180 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	FADS2P1	A8MWK0	482 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	PRSS44	E7EML9	344 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	SEC14L2	O76054	403 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	CSK	P41240	450 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	GP2	P55259	537 aa	Known RBP	11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	ACTR1A	P61163	376 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	MADCAM1	Q13477	382 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	ZMYND11	Q15326	602 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063		Q6ZPB1	254 aa	Predicted RBP	11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	SLC16A12	Q6ZSM3	486 aa		11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	MRPL43	Q8N983	215 aa	Known RBP	11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	ZNF420	Q8TAQ5	688 aa	Predicted RBP	11.16	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	HPS1	Q92902	700 aa		11.16	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms